1 Response_reg#1
1-67 aa · 67 aa · 94.4% of protein
Raw token
Response_reg:1:2.26e-17:67:67:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DWZ98_RS06315
Response regulator, CheY family
Dorea formicigenerans · GCF_003475215
ClassRRTypeCheYLength71 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_003475215#DWZ98_RS06315Stable P2CS identifier used across views.
GenomeGCF_003475215Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Dorea
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length71 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage67 / 71 aa (94.4%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa71 aa
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:1:2.26e-17:67:67:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_003475215::NZ_QRPD01000004.1::G00047
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span108493-108708Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDWZ98_06310RefSeq proteinWP_227142994.1
Context group ID
GCF_003475215::NZ_QRPD01000004.1::G00047Context members
DWZ98_RS06315
Partner locus tags
DWZ98_RS06315
Partner old locus tags
DWZ98_06310
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_227142994.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDWZ98_RS06315Primary locus identifier stored in the genes table.
Old locus tagDWZ98_06310Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QRPD01000004.1Sequence record reported by the local genomic context database.
Genomic interval108 493-108 708 nt216 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span108 493-108 708 ntGCF_003475215::NZ_QRPD01000004.1::G00047
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003475215::NZ_QRPD01000004.1::G00047Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QRPD01000004.1All displayed genes belong to this local TCS context.
Neighborhood span108 493-108 708 nt216 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
108 493 nt108 708 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
DWZ98_RS06315GCF_003475215#DWZ98_RS06315
RRCheYCurrent focus
108 493-108 708 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003437485#DXD18_RS12310Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg1 domain in the representative PFAM annotation.
PFAM architecture for RROC_2477942
Simplified PFAM architecture for RROC_2477942
PFAM domain coverage: 67 / 71 aa (94.4%)
1 aa71 aa
Response_reg
- Simplified architecture: Response_reg
- Raw architecture: Response_reg[1-67]
- Domain count: 1
- Matched identifier: RROC_2477942
- Positioned domains: Response_reg 1-67 ; Response_reg 1-67
Cluster members and taxonomy
Representative gene: GCF_003437485#DXD18_RS12310
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 39 486 · GCF_003475215
AssemblyASM347521v1 · Scaffoldhaploid
Genome composition3 408 767 bp · 41,0% GCDorea formicigenerans
Signal transduction countsGenes 98 · HK 48 · RR 48CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusDorea
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Dorea
Related genes
Preview from the same derived genome key