1 HisKA#1
197-260 aa · 64 aa · 15.2% of protein
Raw token
HisKA:197:0.0000000485:260:64:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DWZ98_RS06140
Histidine kinase, Classic
Dorea formicigenerans · GCF_003475215
ClassHKTypeClassicLength421 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003475215#DWZ98_RS06140Stable P2CS identifier used across views.
GenomeGCF_003475215Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Dorea
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length421 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage174 / 421 aa (41.3%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa421 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
309-418 aa · 110 aa · 26.1% of protein
Raw token
HATPase_c:309:3.7e-30:418:110:109- Raw architecture: HisKA:197:0.0000000485:260:64:64#HATPase_c:309:3.7e-30:418:110:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003475215::NZ_QRPD01000004.1::G00046
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span74817-76747Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDWZ98_06135RefSeq proteinWP_117606912.1
Context group ID
GCF_003475215::NZ_QRPD01000004.1::G00046Context members
DWZ98_RS06135DWZ98_RS06140
Partner locus tags
DWZ98_RS06135DWZ98_RS06140
Partner old locus tags
DWZ98_06130DWZ98_06135
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_117606912.1Primary protein accession used for annex mappings.
UniProt accessionA0A3E4L5U9Primary UniProt accession resolved in the annex database.
UniProt IDA0A3E4L5U9_9FIRMDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDWZ98_RS06140Primary locus identifier stored in the genes table.
Old locus tagDWZ98_06135Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QRPD01000004.1Sequence record reported by the local genomic context database.
Genomic interval75 482-76 747 nt1 266 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span74 817-76 747 ntGCF_003475215::NZ_QRPD01000004.1::G00046
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003475215::NZ_QRPD01000004.1::G00046Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QRPD01000004.1All displayed genes belong to this local TCS context.
Neighborhood span74 817-76 747 nt1 931 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
74 817 nt76 747 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DWZ98_RS06135GCF_003475215#DWZ98_RS06135
RROmpR
74 817-75 506 nt · Forward (+)
DWZ98_RS06140GCF_003475215#DWZ98_RS06140
HKClassicCurrent focus
75 482-76 747 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003437485#DXD18_RS12480Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2258482
Simplified PFAM architecture for HKOC_2258482
PFAM domain coverage: 176 / 421 aa (41.8%)
1 aa421 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[196-260] | HATPase_c[309-419]
- Domain count: 2
- Matched identifier: HKOC_2258482
- Positioned domains: HisKA 196-260 ; HATPase_c 309-419
Cluster members and taxonomy
Representative gene: GCF_003437485#DXD18_RS12480
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 39 486 · GCF_003475215
AssemblyASM347521v1 · Scaffoldhaploid
Genome composition3 408 767 bp · 41,0% GCDorea formicigenerans
Signal transduction countsGenes 98 · HK 48 · RR 48CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusDorea
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Dorea
Related genes
Preview from the same derived genome key