1 Response_reg#1
7-116 aa · 110 aa · 47.0% of protein
Raw token
Response_reg:7:1.52e-35:116:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DWZ98_RS05815
Response regulator OmpR family
Dorea formicigenerans · GCF_003475215
ClassRRTypeOmpRLength234 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003475215#DWZ98_RS05815Stable P2CS identifier used across views.
GenomeGCF_003475215Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Dorea
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length234 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage185 / 234 aa (79.1%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa234 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
157-231 aa · 75 aa · 32.1% of protein
Raw token
Trans_reg_C:157:8.39e-34:231:77:77- Raw architecture: Response_reg:7:1.52e-35:116:111:111#Trans_reg_C:157:8.39e-34:231:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003475215::NZ_QRPD01000004.1::G00044
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span18902-21051Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDWZ98_05815RefSeq proteinWP_005330374.1
Context group ID
GCF_003475215::NZ_QRPD01000004.1::G00044Context members
DWZ98_RS05815DWZ98_RS05820
Partner locus tags
DWZ98_RS05815DWZ98_RS05820
Partner old locus tags
DWZ98_05815DWZ98_05820
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_005330374.1Primary protein accession used for annex mappings.
UniProt accessionB0G1M7Primary UniProt accession resolved in the annex database.
UniProt IDB0G1M7_9FIRMDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDWZ98_RS05815Primary locus identifier stored in the genes table.
Old locus tagDWZ98_05815Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QRPD01000004.1Sequence record reported by the local genomic context database.
Genomic interval18 902-19 606 nt705 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span18 902-21 051 ntGCF_003475215::NZ_QRPD01000004.1::G00044
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003475215::NZ_QRPD01000004.1::G00044Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QRPD01000004.1All displayed genes belong to this local TCS context.
Neighborhood span18 902-21 051 nt2 150 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
18 902 nt21 051 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DWZ98_RS05815GCF_003475215#DWZ98_RS05815
RROmpRCurrent focus
18 902-19 606 nt · Forward (+)
DWZ98_RS05820GCF_003475215#DWZ98_RS05820
HKClassic
19 639-21 051 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000169235#DORFOR_RS00620Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1047551
Simplified PFAM architecture for RROC_1047551
PFAM domain coverage: 185 / 234 aa (79.1%)
1 aa234 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[7-116] | Trans_reg_C[157-231]
- Domain count: 2
- Matched identifier: RROC_1047551
- Positioned domains: Response_reg 7-116 ; Response_reg 7-116 ; Trans_reg_C 157-231 ; Trans_reg_C 157-231
Cluster members and taxonomy
Representative gene: GCF_000169235#DORFOR_RS00620
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 39 486 · GCF_003475215
AssemblyASM347521v1 · Scaffoldhaploid
Genome composition3 408 767 bp · 41,0% GCDorea formicigenerans
Signal transduction countsGenes 98 · HK 48 · RR 48CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusDorea
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Dorea
Related genes
Preview from the same derived genome key