1 GAF#1
46-182 aa · 137 aa · 16.1% of protein
Raw token
GAF:46:0.0000268:182:137:133P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DWZ98_RS05645
Histidine kinase, Hybrid
Dorea formicigenerans · GCF_003475215
ClassHKTypeHybridLength853 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_003475215#DWZ98_RS05645Stable P2CS identifier used across views.
GenomeGCF_003475215Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Dorea
Domain signature
Compact overview inferred from the domain field
GAFPAS_3HisKAHATPase_cResponse_reg
Protein length853 aaLength used to scale native and Biotite-like views.
Annotated domains55 with usable coordinates.
Domain coverage527 / 853 aa (61.8%)Merged over positioned domains only.
Domain description1 GAF,1 PAS_3,1 HisKA,1 HATPase_c,1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa853 aa
Domain-by-domain annotation5 items
2 PAS_3#2
230-318 aa · 89 aa · 10.4% of protein
Raw token
PAS_3:230:0.00000811:318:90:893 HisKA#3
477-542 aa · 66 aa · 7.7% of protein
Raw token
HisKA:477:0.00000000000000614:542:66:644 HATPase_c#4
591-708 aa · 118 aa · 13.8% of protein
Raw token
HATPase_c:591:1.94e-28:708:118:1095 Response_reg#5
731-847 aa · 117 aa · 13.7% of protein
Raw token
Response_reg:731:2.16e-32:847:117:111- Raw architecture: GAF:46:0.0000268:182:137:133#PAS_3:230:0.00000811:318:90:89#HisKA:477:0.00000000000000614:542:66:64#HATPase_c:591:1.94e-28:708:118:109#Response_reg:731:2.16e-32:847:117:111
- Domain description: 1 GAF,1 PAS_3,1 HisKA,1 HATPase_c,1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_003475215::NZ_QRPD01000003.1::G00043
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span246751-249312Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDWZ98_05645RefSeq proteinWP_242994219.1
Context group ID
GCF_003475215::NZ_QRPD01000003.1::G00043Context members
DWZ98_RS05645
Partner locus tags
DWZ98_RS05645
Partner old locus tags
DWZ98_05645
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_242994219.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDWZ98_RS05645Primary locus identifier stored in the genes table.
Old locus tagDWZ98_05645Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QRPD01000003.1Sequence record reported by the local genomic context database.
Genomic interval246 751-249 312 nt2 562 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span246 751-249 312 ntGCF_003475215::NZ_QRPD01000003.1::G00043
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003475215::NZ_QRPD01000003.1::G00043Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QRPD01000003.1All displayed genes belong to this local TCS context.
Neighborhood span246 751-249 312 nt2 562 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
246 751 nt249 312 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
DWZ98_RS05645GCF_003475215#DWZ98_RS05645
HKHybridCurrent focus
246 751-249 312 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003437485#DXD18_RS05695Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c + Response_reg3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0483496
Simplified PFAM architecture for HKOC_0483496
PFAM domain coverage: 297 / 853 aa (34.8%)
1 aa853 aa
HisKAHATPase_cResponse_reg
- Simplified architecture: HisKA + HATPase_c + Response_reg
- Raw architecture: HisKA[477-542] | HATPase_c[594-707] | Response_reg[731-847]
- Domain count: 3
- Matched identifier: HKOC_0483496
- Positioned domains: HisKA 477-542 ; HATPase_c 594-707 ; Response_reg 731-847
Cluster members and taxonomy
Representative gene: GCF_003437485#DXD18_RS05695
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 39 486 · GCF_003475215
AssemblyASM347521v1 · Scaffoldhaploid
Genome composition3 408 767 bp · 41,0% GCDorea formicigenerans
Signal transduction countsGenes 98 · HK 48 · RR 48CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusDorea
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Dorea
Related genes
Preview from the same derived genome key