1 Response_reg#1
6-114 aa · 109 aa · 20.4% of protein
Raw token
Response_reg:6:2.3e-26:114:109:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DWZ98_RS05440
Response regulator, unclassified
Dorea formicigenerans · GCF_003475215
ClassRRTypeunclassifiedLength534 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003475215#DWZ98_RS05440Stable P2CS identifier used across views.
GenomeGCF_003475215Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Dorea
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length534 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage175 / 534 aa (32.8%)Merged over positioned domains only.
Domain description1 Response_reg,2 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa534 aa
Domain-by-domain annotation3 items
2 HTH_AraC#2
444-479 aa · 36 aa · 6.7% of protein
Raw token
HTH_AraC:444:0.0000000016:479:36:423 HTH_AraC#3
500-529 aa · 30 aa · 5.6% of protein
Raw token
HTH_AraC:500:0.0000000522:529:30:42- Raw architecture: Response_reg:6:2.3e-26:114:109:111#HTH_AraC:444:0.0000000016:479:36:42#HTH_AraC:500:0.0000000522:529:30:42
- Domain description: 1 Response_reg,2 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003475215::NZ_QRPD01000003.1::G00042
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span207438-210886Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDWZ98_05440RefSeq proteinWP_117657282.1
Context group ID
GCF_003475215::NZ_QRPD01000003.1::G00042Context members
DWZ98_RS05440DWZ98_RS05445
Partner locus tags
DWZ98_RS05440DWZ98_RS05445
Partner old locus tags
DWZ98_05440DWZ98_05445
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_117657282.1Primary protein accession used for annex mappings.
UniProt accessionA0A415N2Z5Primary UniProt accession resolved in the annex database.
UniProt IDA0A415N2Z5_9FIRMDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDWZ98_RS05440Primary locus identifier stored in the genes table.
Old locus tagDWZ98_05440Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QRPD01000003.1Sequence record reported by the local genomic context database.
Genomic interval207 438-209 042 nt1 605 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span207 438-210 886 ntGCF_003475215::NZ_QRPD01000003.1::G00042
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003475215::NZ_QRPD01000003.1::G00042Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QRPD01000003.1All displayed genes belong to this local TCS context.
Neighborhood span207 438-210 886 nt3 449 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
207 438 nt210 886 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DWZ98_RS05440GCF_003475215#DWZ98_RS05440
RRunclassifiedCurrent focus
207 438-209 042 nt · Forward (+)
DWZ98_RS05445GCF_003475215#DWZ98_RS05445
HKClassic
209 048-210 886 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003437485#DXD18_RS05490Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + GGDEF_2 + HTH_183 domains in the representative PFAM annotation.
PFAM architecture for RROC_0103608
Simplified PFAM architecture for RROC_0103608
PFAM domain coverage: 321 / 534 aa (60.1%)
1 aa534 aa
Response_regGGDEF_2HTH_18
- Simplified architecture: Response_reg + GGDEF_2 + HTH_18
- Raw architecture: Response_reg[6-116] | GGDEF_2[160-291] | HTH_18[452-529]
- Domain count: 3
- Matched identifier: RROC_0103608
- Positioned domains: Response_reg 6-116 ; Response_reg 6-116 ; GGDEF_2 160-291 ; GGDEF_2 160-291 ; HTH_18 452-529 ; HTH_18 452-529
Cluster members and taxonomy
Representative gene: GCF_003437485#DXD18_RS05490
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 39 486 · GCF_003475215
AssemblyASM347521v1 · Scaffoldhaploid
Genome composition3 408 767 bp · 41,0% GCDorea formicigenerans
Signal transduction countsGenes 98 · HK 48 · RR 48CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusDorea
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Dorea
Related genes
Preview from the same derived genome key