1 Response_reg#1
4-114 aa · 111 aa · 48.5% of protein
Raw token
Response_reg:4:7.76e-30:114:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DWZ98_RS05145
Response regulator OmpR family
Dorea formicigenerans · GCF_003475215
ClassRRTypeOmpRLength229 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003475215#DWZ98_RS05145Stable P2CS identifier used across views.
GenomeGCF_003475215Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Dorea
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length229 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage187 / 229 aa (81.7%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa229 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
148-223 aa · 76 aa · 33.2% of protein
Raw token
Trans_reg_C:148:8.11e-25:223:78:77- Raw architecture: Response_reg:4:7.76e-30:114:111:111#Trans_reg_C:148:8.11e-25:223:78:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003475215::NZ_QRPD01000003.1::G00040
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span146630-148347Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDWZ98_05145RefSeq proteinWP_118049290.1
Context group ID
GCF_003475215::NZ_QRPD01000003.1::G00040Context members
DWZ98_RS05145DWZ98_RS05150
Partner locus tags
DWZ98_RS05145DWZ98_RS05150
Partner old locus tags
DWZ98_05145DWZ98_05150
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_118049290.1Primary protein accession used for annex mappings.
UniProt accessionA0A415N2Y3Primary UniProt accession resolved in the annex database.
UniProt IDA0A415N2Y3_9FIRMDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDWZ98_RS05145Primary locus identifier stored in the genes table.
Old locus tagDWZ98_05145Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QRPD01000003.1Sequence record reported by the local genomic context database.
Genomic interval146 630-147 319 nt690 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span146 630-148 347 ntGCF_003475215::NZ_QRPD01000003.1::G00040
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003475215::NZ_QRPD01000003.1::G00040Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QRPD01000003.1All displayed genes belong to this local TCS context.
Neighborhood span146 630-148 347 nt1 718 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
146 630 nt148 347 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DWZ98_RS05145GCF_003475215#DWZ98_RS05145
RROmpRCurrent focus
146 630-147 319 nt · Forward (+)
DWZ98_RS05150GCF_003475215#DWZ98_RS05150
HKClassic
147 316-148 347 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003466965#DW934_RS08965Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1261103
Simplified PFAM architecture for RROC_1261103
PFAM domain coverage: 185 / 229 aa (80.8%)
1 aa229 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-113] | Trans_reg_C[148-222]
- Domain count: 2
- Matched identifier: RROC_1261103
- Positioned domains: Response_reg 4-113 ; Response_reg 4-113 ; Trans_reg_C 148-222 ; Trans_reg_C 148-222
Cluster members and taxonomy
Representative gene: GCF_003466965#DW934_RS08965
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 39 486 · GCF_003475215
AssemblyASM347521v1 · Scaffoldhaploid
Genome composition3 408 767 bp · 41,0% GCDorea formicigenerans
Signal transduction countsGenes 98 · HK 48 · RR 48CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusDorea
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Dorea
Related genes
Preview from the same derived genome key