1 HAMP#1
294-363 aa · 70 aa · 11.8% of protein
Raw token
HAMP:294:0.000000000000487:363:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DWZ98_RS04150
Histidine kinase, Classic
Dorea formicigenerans · GCF_003475215
ClassHKTypeClassicLength592 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003475215#DWZ98_RS04150Stable P2CS identifier used across views.
GenomeGCF_003475215Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Dorea
Domain signature
Compact overview inferred from the domain field
HAMPHis_kinaseHATPase_c
Protein length592 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage258 / 592 aa (43.6%)Merged over positioned domains only.
Domain description1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa592 aa
Domain-by-domain annotation3 items
2 His_kinase#2
378-452 aa · 75 aa · 12.7% of protein
Raw token
His_kinase:378:7.36e-33:452:75:803 HATPase_c#3
473-585 aa · 113 aa · 19.1% of protein
Raw token
HATPase_c:473:0.00000000141:585:114:109- Raw architecture: HAMP:294:0.000000000000487:363:70:69#His_kinase:378:7.36e-33:452:75:80#HATPase_c:473:0.00000000141:585:114:109
- Domain description: 1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003475215::NZ_QRPD01000002.1::G00026
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span332496-335869Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDWZ98_04150RefSeq proteinWP_118427012.1
Context group ID
GCF_003475215::NZ_QRPD01000002.1::G00026Context members
DWZ98_RS04145DWZ98_RS04150
Partner locus tags
DWZ98_RS04145DWZ98_RS04150
Partner old locus tags
DWZ98_04145DWZ98_04150
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_118427012.1Primary protein accession used for annex mappings.
UniProt accessionA0A415N4Q5Primary UniProt accession resolved in the annex database.
UniProt IDA0A415N4Q5_9FIRMDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDWZ98_RS04150Primary locus identifier stored in the genes table.
Old locus tagDWZ98_04150Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QRPD01000002.1Sequence record reported by the local genomic context database.
Genomic interval334 091-335 869 nt1 779 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span332 496-335 869 ntGCF_003475215::NZ_QRPD01000002.1::G00026
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003475215::NZ_QRPD01000002.1::G00026Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QRPD01000002.1All displayed genes belong to this local TCS context.
Neighborhood span332 496-335 869 nt3 374 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
332 496 nt335 869 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DWZ98_RS04145GCF_003475215#DWZ98_RS04145
RRunclassified
332 496-334 094 nt · Forward (+)
DWZ98_RS04150GCF_003475215#DWZ98_RS04150
HKClassicCurrent focus
334 091-335 869 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003475215#DWZ98_RS04150The current gene is the representative for this cluster.
PFAM architectureHAMP + His_kinase + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1100594
Simplified PFAM architecture for HKOC_1100594
PFAM domain coverage: 243 / 592 aa (41.0%)
1 aa592 aa
HAMPHis_kinaseHATPase_c
- Simplified architecture: HAMP + His_kinase + HATPase_c
- Raw architecture: HAMP[311-363] | His_kinase[379-453] | HATPase_c[472-586]
- Domain count: 3
- Matched identifier: HKOC_1100594
- Positioned domains: HAMP 311-363 ; His_kinase 379-453 ; HATPase_c 472-586
Cluster members and taxonomy
Representative gene: GCF_003475215#DWZ98_RS04150
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 39 486 · GCF_003475215
AssemblyASM347521v1 · Scaffoldhaploid
Genome composition3 408 767 bp · 41,0% GCDorea formicigenerans
Signal transduction countsGenes 98 · HK 48 · RR 48CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusDorea
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Dorea
Related genes
Preview from the same derived genome key