1 HisKA#1
45-110 aa · 66 aa · 15.5% of protein
Raw token
HisKA:45:1.91e-16:110:66:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DWZ98_RS02310
Histidine kinase, Hybrid
Dorea formicigenerans · GCF_003475215
ClassHKTypeHybridLength425 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_003475215#DWZ98_RS02310Stable P2CS identifier used across views.
GenomeGCF_003475215Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Dorea
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_cResponse_reg
Protein length425 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage301 / 425 aa (70.8%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_c,1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa425 aa
Domain-by-domain annotation3 items
2 HATPase_c#2
159-276 aa · 118 aa · 27.8% of protein
Raw token
HATPase_c:159:3.87e-27:276:119:1093 Response_reg#3
297-413 aa · 117 aa · 27.5% of protein
Raw token
Response_reg:297:4.61e-31:413:117:111- Raw architecture: HisKA:45:1.91e-16:110:66:64#HATPase_c:159:3.87e-27:276:119:109#Response_reg:297:4.61e-31:413:117:111
- Domain description: 1 HisKA,1 HATPase_c,1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_003475215::NZ_QRPD01000001.1::G00004
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span466655-467932Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDWZ98_02305RefSeq proteinWP_242994181.1
Context group ID
GCF_003475215::NZ_QRPD01000001.1::G00004Context members
DWZ98_RS02310
Partner locus tags
DWZ98_RS02310
Partner old locus tags
DWZ98_02305
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_242994181.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDWZ98_RS02310Primary locus identifier stored in the genes table.
Old locus tagDWZ98_02305Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QRPD01000001.1Sequence record reported by the local genomic context database.
Genomic interval466 655-467 932 nt1 278 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span466 655-467 932 ntGCF_003475215::NZ_QRPD01000001.1::G00004
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003475215::NZ_QRPD01000001.1::G00004Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QRPD01000001.1All displayed genes belong to this local TCS context.
Neighborhood span466 655-467 932 nt1 278 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
466 655 nt467 932 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
DWZ98_RS02310GCF_003475215#DWZ98_RS02310
HKHybridCurrent focus
466 655-467 932 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003437485#DXD18_RS03775Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c + Response_reg3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2217739
Simplified PFAM architecture for HKOC_2217739
PFAM domain coverage: 299 / 425 aa (70.4%)
1 aa425 aa
HisKAHATPase_cResponse_reg
- Simplified architecture: HisKA + HATPase_c + Response_reg
- Raw architecture: HisKA[45-110] | HATPase_c[160-275] | Response_reg[297-413]
- Domain count: 3
- Matched identifier: HKOC_2217739
- Positioned domains: HisKA 45-110 ; HATPase_c 160-275 ; Response_reg 297-413
Cluster members and taxonomy
Representative gene: GCF_003437485#DXD18_RS03775
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 39 486 · GCF_003475215
AssemblyASM347521v1 · Scaffoldhaploid
Genome composition3 408 767 bp · 41,0% GCDorea formicigenerans
Signal transduction countsGenes 98 · HK 48 · RR 48CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusDorea
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Dorea
Related genes
Preview from the same derived genome key