1 Response_reg#1
30-106 aa · 77 aa · 32.5% of protein
Raw token
Response_reg:30:0.00000018:106:81:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DWZ70_RS05605
Response regulator LytTR family
Mediterraneibacter gnavus · GCF_003475065
ClassRRTypeLytTRLength237 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_003475065#DWZ70_RS05605Stable P2CS identifier used across views.
GenomeGCF_003475065Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length237 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage166 / 237 aa (70.0%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa237 aa
Domain-by-domain annotation2 items
2 LytTR#2
139-227 aa · 89 aa · 37.6% of protein
Raw token
LytTR:139:0.0000000000000154:227:94:98- Raw architecture: Response_reg:30:0.00000018:106:81:111#LytTR:139:0.0000000000000154:227:94:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_003475065::NZ_QRPU01000005.1::G00041
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span9330-10043Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDWZ70_05610RefSeq proteinWP_182432141.1
Context group ID
GCF_003475065::NZ_QRPU01000005.1::G00041Context members
DWZ70_RS05605
Partner locus tags
DWZ70_RS05605
Partner old locus tags
DWZ70_05610
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_182432141.1Primary protein accession used for annex mappings.
UniProt accessionA0ABR7IMG0Primary UniProt accession resolved in the annex database.
UniProt IDA0ABR7IMG0_9FIRMDisplay identifier provided by UniProt.
GO / PubMed0 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDWZ70_RS05605Primary locus identifier stored in the genes table.
Old locus tagDWZ70_05610Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QRPU01000005.1Sequence record reported by the local genomic context database.
Genomic interval9 330-10 043 nt714 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span9 330-10 043 ntGCF_003475065::NZ_QRPU01000005.1::G00041
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003475065::NZ_QRPU01000005.1::G00041Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QRPU01000005.1All displayed genes belong to this local TCS context.
Neighborhood span9 330-10 043 nt714 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
9 330 nt10 043 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
DWZ70_RS05605GCF_003475065#DWZ70_RS05605
RRLytTRCurrent focus
9 330-10 043 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003475065#DWZ70_RS05605The current gene is the representative for this cluster.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0968575
Simplified PFAM architecture for RROC_0968575
PFAM domain coverage: 187 / 237 aa (78.9%)
1 aa237 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[14-112] | LytTR[139-226]
- Domain count: 2
- Matched identifier: RROC_0968575
- Positioned domains: Response_reg 14-112 ; Response_reg 14-112 ; LytTR 139-226 ; LytTR 139-226
Cluster members and taxonomy
Representative gene: GCF_003475065#DWZ70_RS05605
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 33 038 · GCF_003475065
AssemblyASM347506v1 · Scaffoldhaploid
Genome composition3 364 919 bp · 42,0% GCMediterraneibacter gnavus
Signal transduction countsGenes 84 · HK 40 · RR 43CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key