1 Response_reg#1
51-112 aa · 62 aa · 25.6% of protein
Raw token
Response_reg:51:0.00000000000058:112:64:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DWZ70_RS05595
Response regulator LytTR family
Mediterraneibacter gnavus · GCF_003475065
ClassRRTypeLytTRLength242 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_003475065#DWZ70_RS05595Stable P2CS identifier used across views.
GenomeGCF_003475065Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length242 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage148 / 242 aa (61.2%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa242 aa
Domain-by-domain annotation2 items
2 LytTR#2
141-226 aa · 86 aa · 35.5% of protein
Raw token
LytTR:141:9.19e-20:226:91:98- Raw architecture: Response_reg:51:0.00000000000058:112:64:111#LytTR:141:9.19e-20:226:91:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_003475065::NZ_QRPU01000005.1::G00040
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span6884-7612Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDWZ70_05600RefSeq proteinWP_117801569.1
Context group ID
GCF_003475065::NZ_QRPU01000005.1::G00040Context members
DWZ70_RS05595
Partner locus tags
DWZ70_RS05595
Partner old locus tags
DWZ70_05600
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_117801569.1Primary protein accession used for annex mappings.
UniProt accessionA0ABR7IMI8Primary UniProt accession resolved in the annex database.
UniProt IDA0ABR7IMI8_9FIRMDisplay identifier provided by UniProt.
GO / PubMed0 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDWZ70_RS05595Primary locus identifier stored in the genes table.
Old locus tagDWZ70_05600Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QRPU01000005.1Sequence record reported by the local genomic context database.
Genomic interval6 884-7 612 nt729 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span6 884-7 612 ntGCF_003475065::NZ_QRPU01000005.1::G00040
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003475065::NZ_QRPU01000005.1::G00040Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QRPU01000005.1All displayed genes belong to this local TCS context.
Neighborhood span6 884-7 612 nt729 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
6 884 nt7 612 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
DWZ70_RS05595GCF_003475065#DWZ70_RS05595
RRLytTRCurrent focus
6 884-7 612 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_013305055#G5B08_RS09850Use this link to inspect the representative gene detail.
PFAM architectureHTH_3 + Response_reg + LytTR3 domains in the representative PFAM annotation.
PFAM architecture for RROC_0457459
Simplified PFAM architecture for RROC_0457459
PFAM domain coverage: 251 / 361 aa (69.5%)
1 aa361 aa
HTH_3Response_regLytTR
- Simplified architecture: HTH_3 + Response_reg + LytTR
- Raw architecture: HTH_3[5-59] | Response_reg[123-233] | LytTR[260-344]
- Domain count: 3
- Matched identifier: RROC_0457459
- Positioned domains: HTH_3 5-59 ; Response_reg 123-233 ; LytTR 260-344
Cluster members and taxonomy
Representative gene: GCF_013305055#G5B08_RS09850
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 33 038 · GCF_003475065
AssemblyASM347506v1 · Scaffoldhaploid
Genome composition3 364 919 bp · 42,0% GCMediterraneibacter gnavus
Signal transduction countsGenes 84 · HK 40 · RR 43CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key