1 HisKA_3#1
201-265 aa · 65 aa · 15.9% of protein
Raw token
HisKA_3:201:0.000000606:265:65:68P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DWZ85_RS08590
Histidine kinase, Classic
Bifidobacterium longum · GCF_003474905
ClassHKTypeClassicLength410 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003474905#DWZ85_RS08590Stable P2CS identifier used across views.
GenomeGCF_003474905Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
HisKA_3HATPase_c
Protein length410 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage136 / 410 aa (33.2%)Merged over positioned domains only.
Domain description1 HisKA_3,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa410 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
322-392 aa · 71 aa · 17.3% of protein
Raw token
HATPase_c:322:0.0000301:392:86:109- Raw architecture: HisKA_3:201:0.000000606:265:65:68#HATPase_c:322:0.0000301:392:86:109
- Domain description: 1 HisKA_3,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003474905::NZ_QRPJ01000006.1::G00011
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span53156-55148Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDWZ85_08590RefSeq proteinWP_182430823.1
Context group ID
GCF_003474905::NZ_QRPJ01000006.1::G00011Context members
DWZ85_RS08590DWZ85_RS08595
Partner locus tags
DWZ85_RS08590DWZ85_RS08595
Partner old locus tags
DWZ85_08590DWZ85_08595
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_182430823.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDWZ85_RS08590Primary locus identifier stored in the genes table.
Old locus tagDWZ85_08590Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QRPJ01000006.1Sequence record reported by the local genomic context database.
Genomic interval53 156-54 388 nt1 233 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span53 156-55 148 ntGCF_003474905::NZ_QRPJ01000006.1::G00011
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003474905::NZ_QRPJ01000006.1::G00011Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QRPJ01000006.1All displayed genes belong to this local TCS context.
Neighborhood span53 156-55 148 nt1 993 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
53 156 nt55 148 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DWZ85_RS08590GCF_003474905#DWZ85_RS08590
HKClassicCurrent focus
53 156-54 388 nt · Forward (+)
DWZ85_RS08595GCF_003474905#DWZ85_RS08595
RRNarL
54 423-55 148 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003474905#DWZ85_RS08590The current gene is the representative for this cluster.
PFAM architectureHisKA_31 domain in the representative PFAM annotation.
PFAM architecture for HKOC_2355791
Simplified PFAM architecture for HKOC_2355791
PFAM domain coverage: 69 / 410 aa (16.8%)
1 aa410 aa
HisKA_3
- Simplified architecture: HisKA_3
- Raw architecture: HisKA_3[200-268]
- Domain count: 1
- Matched identifier: HKOC_2355791
- Positioned domains: HisKA_3 200-268
Cluster members and taxonomy
Representative gene: GCF_003474905#DWZ85_RS08590
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 216 816 · GCF_003474905
AssemblyASM347490v1 · Scaffoldhaploid
Genome composition2 378 857 bp · 60,0% GCBifidobacterium longum
Signal transduction countsGenes 21 · HK 10 · RR 10CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key