1 Response_reg#1
6-119 aa · 114 aa · 21.4% of protein
Raw token
Response_reg:6:1.88e-26:119:114:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DW152_RS10870
Response regulator, unclassified
Dorea sp. AM13-35 · GCF_003473885
ClassRRTypeunclassifiedLength533 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003473885#DW152_RS10870Stable P2CS identifier used across views.
GenomeGCF_003473885Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Dorea
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length533 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage178 / 533 aa (33.4%)Merged over positioned domains only.
Domain description1 Response_reg,2 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa533 aa
Domain-by-domain annotation3 items
2 HTH_AraC#2
445-479 aa · 35 aa · 6.6% of protein
Raw token
HTH_AraC:445:0.0000000104:479:35:423 HTH_AraC#3
500-528 aa · 29 aa · 5.4% of protein
Raw token
HTH_AraC:500:0.00000033:528:29:42- Raw architecture: Response_reg:6:1.88e-26:119:114:111#HTH_AraC:445:0.0000000104:479:35:42#HTH_AraC:500:0.00000033:528:29:42
- Domain description: 1 Response_reg,2 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003473885::NZ_QUCZ01000009.1::G00031
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span78172-81636Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDW152_10875RefSeq proteinWP_117538043.1
Context group ID
GCF_003473885::NZ_QUCZ01000009.1::G00031Context members
DW152_RS10865DW152_RS10870
Partner locus tags
DW152_RS10865DW152_RS10870
Partner old locus tags
DW152_10870DW152_10875
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_117538043.1Primary protein accession used for annex mappings.
UniProt accessionA0ABR7EXU5Primary UniProt accession resolved in the annex database.
UniProt IDA0ABR7EXU5_9FIRMDisplay identifier provided by UniProt.
GO / PubMed0 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDW152_RS10870Primary locus identifier stored in the genes table.
Old locus tagDW152_10875Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QUCZ01000009.1Sequence record reported by the local genomic context database.
Genomic interval80 035-81 636 nt1 602 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span78 172-81 636 ntGCF_003473885::NZ_QUCZ01000009.1::G00031
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003473885::NZ_QUCZ01000009.1::G00031Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QUCZ01000009.1All displayed genes belong to this local TCS context.
Neighborhood span78 172-81 636 nt3 465 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
78 172 nt81 636 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DW152_RS10865GCF_003473885#DW152_RS10865
HKClassic
78 172-79 947 nt · Reverse (-)
DW152_RS10870GCF_003473885#DW152_RS10870
RRunclassifiedCurrent focus
80 035-81 636 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003435815#DW125_RS09990Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + GGDEF_2 + HTH_183 domains in the representative PFAM annotation.
PFAM architecture for RROC_0106401
Simplified PFAM architecture for RROC_0106401
PFAM domain coverage: 323 / 533 aa (60.6%)
1 aa533 aa
Response_regGGDEF_2HTH_18
- Simplified architecture: Response_reg + GGDEF_2 + HTH_18
- Raw architecture: Response_reg[6-118] | GGDEF_2[160-291] | HTH_18[452-529]
- Domain count: 3
- Matched identifier: RROC_0106401
- Positioned domains: Response_reg 6-118 ; Response_reg 6-118 ; GGDEF_2 160-291 ; GGDEF_2 160-291 ; HTH_18 452-529 ; HTH_18 452-529
Cluster members and taxonomy
Representative gene: GCF_003435815#DW125_RS09990
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 293 099 · GCF_003473885
AssemblyASM347388v1 · Scaffoldhaploid
Genome composition2 785 699 bp · 41,5% GCDorea sp. AM13-35
Signal transduction countsGenes 59 · HK 31 · RR 27CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusDorea
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Dorea
Related genes
Preview from the same derived genome key