1 HAMP#1
138-204 aa · 67 aa · 15.2% of protein
Raw token
HAMP:138:0.000000713:204:67:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DW152_RS10510
Histidine kinase, Classic
Dorea sp. AM13-35 · GCF_003473885
ClassHKTypeClassicLength440 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003473885#DW152_RS10510Stable P2CS identifier used across views.
GenomeGCF_003473885Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Dorea
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length440 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage239 / 440 aa (54.3%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa440 aa
Domain-by-domain annotation3 items
2 HisKA#2
219-288 aa · 70 aa · 15.9% of protein
Raw token
HisKA:219:0.00000000551:288:70:643 HATPase_c#3
334-435 aa · 102 aa · 23.2% of protein
Raw token
HATPase_c:334:4.32e-26:435:103:109- Raw architecture: HAMP:138:0.000000713:204:67:69#HisKA:219:0.00000000551:288:70:64#HATPase_c:334:4.32e-26:435:103:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003473885::NZ_QUCZ01000009.1::G00029
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span8921-10905Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDW152_10515RefSeq proteinWP_118288580.1
Context group ID
GCF_003473885::NZ_QUCZ01000009.1::G00029Context members
DW152_RS10510DW152_RS10515
Partner locus tags
DW152_RS10510DW152_RS10515
Partner old locus tags
DW152_10515DW152_10520
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_118288580.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDW152_RS10510Primary locus identifier stored in the genes table.
Old locus tagDW152_10515Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QUCZ01000009.1Sequence record reported by the local genomic context database.
Genomic interval8 921-10 243 nt1 323 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span8 921-10 905 ntGCF_003473885::NZ_QUCZ01000009.1::G00029
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003473885::NZ_QUCZ01000009.1::G00029Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QUCZ01000009.1All displayed genes belong to this local TCS context.
Neighborhood span8 921-10 905 nt1 985 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
8 921 nt10 905 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DW152_RS10510GCF_003473885#DW152_RS10510
HKClassicCurrent focus
8 921-10 243 nt · Reverse (-)
DW152_RS10515GCF_003473885#DW152_RS10515
RROmpR
10 231-10 905 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003473885#DW152_RS10510The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2074137
Simplified PFAM architecture for HKOC_2074137
PFAM domain coverage: 172 / 440 aa (39.1%)
1 aa440 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[220-288] | HATPase_c[334-436]
- Domain count: 2
- Matched identifier: HKOC_2074137
- Positioned domains: HisKA 220-288 ; HATPase_c 334-436
Cluster members and taxonomy
Representative gene: GCF_003473885#DW152_RS10510
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 293 099 · GCF_003473885
AssemblyASM347388v1 · Scaffoldhaploid
Genome composition2 785 699 bp · 41,5% GCDorea sp. AM13-35
Signal transduction countsGenes 59 · HK 31 · RR 27CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusDorea
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Dorea
Related genes
Preview from the same derived genome key