1 HisKA#1
210-275 aa · 66 aa · 8.1% of protein
Raw token
HisKA:210:4.19e-18:275:66:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DW152_RS09040
Histidine kinase, Unorthodox
Dorea sp. AM13-35 · GCF_003473885
ClassHKTypeUnorthodoxLength815 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003473885#DW152_RS09040Stable P2CS identifier used across views.
GenomeGCF_003473885Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Dorea
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_cResponse_regHpt
Protein length815 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage352 / 815 aa (43.2%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_c,1 Response_reg,1 HptSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa815 aa
Domain-by-domain annotation4 items
2 HATPase_c#2
322-433 aa · 112 aa · 13.7% of protein
Raw token
HATPase_c:322:9.29e-33:433:112:1093 Response_reg#3
463-572 aa · 110 aa · 13.5% of protein
Raw token
Response_reg:463:1.5e-22:572:110:1114 Hpt#4
629-692 aa · 64 aa · 7.9% of protein
Raw token
Hpt:629:0.0000161:692:64:84- Raw architecture: HisKA:210:4.19e-18:275:66:64#HATPase_c:322:9.29e-33:433:112:109#Response_reg:463:1.5e-22:572:110:111#Hpt:629:0.0000161:692:64:84
- Domain description: 1 HisKA,1 HATPase_c,1 Response_reg,1 Hpt
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003473885::NZ_QUCZ01000007.1::G00025
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span80047-83111Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDW152_09045RefSeq proteinWP_117537364.1
Context group ID
GCF_003473885::NZ_QUCZ01000007.1::G00025Context members
DW152_RS09040DW152_RS09045
Partner locus tags
DW152_RS09040DW152_RS09045
Partner old locus tags
DW152_09045DW152_09050
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_117537364.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDW152_RS09040Primary locus identifier stored in the genes table.
Old locus tagDW152_09045Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QUCZ01000007.1Sequence record reported by the local genomic context database.
Genomic interval80 047-82 494 nt2 448 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span80 047-83 111 ntGCF_003473885::NZ_QUCZ01000007.1::G00025
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003473885::NZ_QUCZ01000007.1::G00025Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QUCZ01000007.1All displayed genes belong to this local TCS context.
Neighborhood span80 047-83 111 nt3 065 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
80 047 nt83 111 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DW152_RS09040GCF_003473885#DW152_RS09040
HKUnorthodoxCurrent focus
80 047-82 494 nt · Forward (+)
DW152_RS09045GCF_003473885#DW152_RS09045
RRNarL
82 494-83 111 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003435815#DW125_RS05735Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c + Response_reg + Hpt4 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0534772
Simplified PFAM architecture for HKOC_0534772
PFAM domain coverage: 354 / 815 aa (43.4%)
1 aa815 aa
HisKAHATPase_cResponse_regHpt
- Simplified architecture: HisKA + HATPase_c + Response_reg + Hpt
- Raw architecture: HisKA[211-275] | HATPase_c[322-432] | Response_reg[463-570] | Hpt[632-701]
- Domain count: 4
- Matched identifier: HKOC_0534772
- Positioned domains: HisKA 211-275 ; HATPase_c 322-432 ; Response_reg 463-570 ; Hpt 632-701
Cluster members and taxonomy
Representative gene: GCF_003435815#DW125_RS05735
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 293 099 · GCF_003473885
AssemblyASM347388v1 · Scaffoldhaploid
Genome composition2 785 699 bp · 41,5% GCDorea sp. AM13-35
Signal transduction countsGenes 59 · HK 31 · RR 27CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusDorea
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Dorea
Related genes
Preview from the same derived genome key