1 HisKA#1
151-214 aa · 64 aa · 15.5% of protein
Raw token
HisKA:151:0.00000000000389:214:64:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DW152_RS07470
Histidine kinase, Classic
Dorea sp. AM13-35 · GCF_003473885
ClassHKTypeClassicLength412 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003473885#DW152_RS07470Stable P2CS identifier used across views.
GenomeGCF_003473885Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Dorea
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length412 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage173 / 412 aa (42.0%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa412 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
263-371 aa · 109 aa · 26.5% of protein
Raw token
HATPase_c:263:1.11e-25:371:110:109- Raw architecture: HisKA:151:0.00000000000389:214:64:64#HATPase_c:263:1.11e-25:371:110:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003473885::NZ_QUCZ01000005.1::G00023
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span170799-172716Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDW152_07475RefSeq proteinWP_118288314.1
Context group ID
GCF_003473885::NZ_QUCZ01000005.1::G00023Context members
DW152_RS07465DW152_RS07470
Partner locus tags
DW152_RS07465DW152_RS07470
Partner old locus tags
DW152_07470DW152_07475
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_118288314.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDW152_RS07470Primary locus identifier stored in the genes table.
Old locus tagDW152_07475Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QUCZ01000005.1Sequence record reported by the local genomic context database.
Genomic interval171 478-172 716 nt1 239 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span170 799-172 716 ntGCF_003473885::NZ_QUCZ01000005.1::G00023
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003473885::NZ_QUCZ01000005.1::G00023Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QUCZ01000005.1All displayed genes belong to this local TCS context.
Neighborhood span170 799-172 716 nt1 918 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
170 799 nt172 716 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DW152_RS07465GCF_003473885#DW152_RS07465
RROmpR
170 799-171 488 nt · Forward (+)
DW152_RS07470GCF_003473885#DW152_RS07470
HKClassicCurrent focus
171 478-172 716 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003473885#DW152_RS07470The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2338036
Simplified PFAM architecture for HKOC_2338036
PFAM domain coverage: 174 / 412 aa (42.2%)
1 aa412 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[152-214] | HATPase_c[263-373]
- Domain count: 2
- Matched identifier: HKOC_2338036
- Positioned domains: HisKA 152-214 ; HATPase_c 263-373
Cluster members and taxonomy
Representative gene: GCF_003473885#DW152_RS07470
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 293 099 · GCF_003473885
AssemblyASM347388v1 · Scaffoldhaploid
Genome composition2 785 699 bp · 41,5% GCDorea sp. AM13-35
Signal transduction countsGenes 59 · HK 31 · RR 27CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusDorea
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Dorea
Related genes
Preview from the same derived genome key