1 Response_reg#1
4-114 aa · 111 aa · 47.4% of protein
Raw token
Response_reg:4:9.24e-31:114:112:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DW152_RS07415
Response regulator OmpR family
Dorea sp. AM13-35 · GCF_003473885
ClassRRTypeOmpRLength234 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003473885#DW152_RS07415Stable P2CS identifier used across views.
GenomeGCF_003473885Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Dorea
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length234 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage188 / 234 aa (80.3%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa234 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
153-229 aa · 77 aa · 32.9% of protein
Raw token
Trans_reg_C:153:6.49e-31:229:77:77- Raw architecture: Response_reg:4:9.24e-31:114:112:111#Trans_reg_C:153:6.49e-31:229:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003473885::NZ_QUCZ01000005.1::G00022
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span155960-159292Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDW152_07420RefSeq proteinWP_118288307.1
Context group ID
GCF_003473885::NZ_QUCZ01000005.1::G00022Context members
DW152_RS07415DW152_RS07420
Partner locus tags
DW152_RS07415DW152_RS07420
Partner old locus tags
DW152_07420DW152_07425
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_118288307.1Primary protein accession used for annex mappings.
UniProt accessionA0ABR7EVA0Primary UniProt accession resolved in the annex database.
UniProt IDA0ABR7EVA0_9FIRMDisplay identifier provided by UniProt.
GO / PubMed0 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDW152_RS07415Primary locus identifier stored in the genes table.
Old locus tagDW152_07420Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QUCZ01000005.1Sequence record reported by the local genomic context database.
Genomic interval155 960-156 664 nt705 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span155 960-159 292 ntGCF_003473885::NZ_QUCZ01000005.1::G00022
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003473885::NZ_QUCZ01000005.1::G00022Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QUCZ01000005.1All displayed genes belong to this local TCS context.
Neighborhood span155 960-159 292 nt3 333 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
155 960 nt159 292 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DW152_RS07415GCF_003473885#DW152_RS07415
RROmpRCurrent focus
155 960-156 664 nt · Forward (+)
DW152_RS07420GCF_003473885#DW152_RS07420
HKClassic
156 698-159 292 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003473885#DW152_RS07415The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1055587
Simplified PFAM architecture for RROC_1055587
PFAM domain coverage: 187 / 234 aa (79.9%)
1 aa234 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-114] | Trans_reg_C[153-228]
- Domain count: 2
- Matched identifier: RROC_1055587
- Positioned domains: Response_reg 4-114 ; Response_reg 4-114 ; Trans_reg_C 153-228 ; Trans_reg_C 153-228
Cluster members and taxonomy
Representative gene: GCF_003473885#DW152_RS07415
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 293 099 · GCF_003473885
AssemblyASM347388v1 · Scaffoldhaploid
Genome composition2 785 699 bp · 41,5% GCDorea sp. AM13-35
Signal transduction countsGenes 59 · HK 31 · RR 27CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusDorea
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Dorea
Related genes
Preview from the same derived genome key