1 HisKA#1
297-363 aa · 67 aa · 10.0% of protein
Raw token
HisKA:297:1.2e-16:363:67:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DW152_RS06875
Histidine kinase, Hybrid
Dorea sp. AM13-35 · GCF_003473885
ClassHKTypeHybridLength672 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003473885#DW152_RS06875Stable P2CS identifier used across views.
GenomeGCF_003473885Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Dorea
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_cResponse_reg
Protein length672 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage297 / 672 aa (44.2%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_c,1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa672 aa
Domain-by-domain annotation3 items
2 HATPase_c#2
409-524 aa · 116 aa · 17.3% of protein
Raw token
HATPase_c:409:2.81e-27:524:116:1093 Response_reg#3
552-665 aa · 114 aa · 17.0% of protein
Raw token
Response_reg:552:1.87e-26:665:114:111- Raw architecture: HisKA:297:1.2e-16:363:67:64#HATPase_c:409:2.81e-27:524:116:109#Response_reg:552:1.87e-26:665:114:111
- Domain description: 1 HisKA,1 HATPase_c,1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003473885::NZ_QUCZ01000005.1::G00019
Group size22 locus tags listed below.
HK / RR2 / 0Counts resolved for the local TCS neighborhood.
Context span22851-27474Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDW152_06880RefSeq proteinWP_118288251.1
Context group ID
GCF_003473885::NZ_QUCZ01000005.1::G00019Context members
DW152_RS06860DW152_RS06875
Partner locus tags
DW152_RS06860DW152_RS06875
Partner old locus tags
DW152_06865DW152_06880
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_118288251.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDW152_RS06875Primary locus identifier stored in the genes table.
Old locus tagDW152_06880Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QUCZ01000005.1Sequence record reported by the local genomic context database.
Genomic interval25 456-27 474 nt2 019 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span22 851-27 474 ntGCF_003473885::NZ_QUCZ01000005.1::G00019
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003473885::NZ_QUCZ01000005.1::G00019Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QUCZ01000005.1All displayed genes belong to this local TCS context.
Neighborhood span22 851-27 474 nt4 624 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
22 851 nt27 474 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DW152_RS06860GCF_003473885#DW152_RS06860
HKHybrid
22 851-24 995 nt · Forward (+)
DW152_RS06875GCF_003473885#DW152_RS06875
HKHybridCurrent focus
25 456-27 474 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003473885#DW152_RS06875The current gene is the representative for this cluster.
PFAM architectureSnoaL_3 + HisKA + HATPase_c + Response_reg4 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0839984
Simplified PFAM architecture for HKOC_0839984
PFAM domain coverage: 418 / 672 aa (62.2%)
1 aa672 aa
SnoaL_3HisKAHATPase_cResponse_reg
- Simplified architecture: SnoaL_3 + HisKA + HATPase_c + Response_reg
- Raw architecture: SnoaL_3[9-130] | HisKA[297-362] | HATPase_c[410-525] | Response_reg[552-665]
- Domain count: 4
- Matched identifier: HKOC_0839984
- Positioned domains: SnoaL_3 9-130 ; HisKA 297-362 ; HATPase_c 410-525 ; Response_reg 552-665
Cluster members and taxonomy
Representative gene: GCF_003473885#DW152_RS06875
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 293 099 · GCF_003473885
AssemblyASM347388v1 · Scaffoldhaploid
Genome composition2 785 699 bp · 41,5% GCDorea sp. AM13-35
Signal transduction countsGenes 59 · HK 31 · RR 27CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusDorea
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Dorea
Related genes
Preview from the same derived genome key