1 HAMP#1
193-260 aa · 68 aa · 13.8% of protein
Raw token
HAMP:193:0.0000000788:260:68:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DW152_RS06400
Histidine kinase, Classic
Dorea sp. AM13-35 · GCF_003473885
ClassHKTypeClassicLength494 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003473885#DW152_RS06400Stable P2CS identifier used across views.
GenomeGCF_003473885Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Dorea
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length494 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage244 / 494 aa (49.4%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa494 aa
Domain-by-domain annotation3 items
2 HisKA#2
264-329 aa · 66 aa · 13.4% of protein
Raw token
HisKA:264:0.000000000000317:329:66:643 HATPase_c#3
377-486 aa · 110 aa · 22.3% of protein
Raw token
HATPase_c:377:1.92e-30:486:110:109- Raw architecture: HAMP:193:0.0000000788:260:68:69#HisKA:264:0.000000000000317:329:66:64#HATPase_c:377:1.92e-30:486:110:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003473885::NZ_QUCZ01000004.1::G00017
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span148240-150373Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDW152_06405RefSeq proteinWP_118288219.1
Context group ID
GCF_003473885::NZ_QUCZ01000004.1::G00017Context members
DW152_RS06395DW152_RS06400
Partner locus tags
DW152_RS06395DW152_RS06400
Partner old locus tags
DW152_06400DW152_06405
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_118288219.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDW152_RS06400Primary locus identifier stored in the genes table.
Old locus tagDW152_06405Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QUCZ01000004.1Sequence record reported by the local genomic context database.
Genomic interval148 889-150 373 nt1 485 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span148 240-150 373 ntGCF_003473885::NZ_QUCZ01000004.1::G00017
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003473885::NZ_QUCZ01000004.1::G00017Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QUCZ01000004.1All displayed genes belong to this local TCS context.
Neighborhood span148 240-150 373 nt2 134 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
148 240 nt150 373 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DW152_RS06395GCF_003473885#DW152_RS06395
RROmpR
148 240-148 932 nt · Forward (+)
DW152_RS06400GCF_003473885#DW152_RS06400
HKClassicCurrent focus
148 889-150 373 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003473885#DW152_RS06400The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1510804
Simplified PFAM architecture for HKOC_1510804
PFAM domain coverage: 176 / 494 aa (35.6%)
1 aa494 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[264-329] | HATPase_c[377-486]
- Domain count: 2
- Matched identifier: HKOC_1510804
- Positioned domains: HisKA 264-329 ; HATPase_c 377-486
Cluster members and taxonomy
Representative gene: GCF_003473885#DW152_RS06400
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 293 099 · GCF_003473885
AssemblyASM347388v1 · Scaffoldhaploid
Genome composition2 785 699 bp · 41,5% GCDorea sp. AM13-35
Signal transduction countsGenes 59 · HK 31 · RR 27CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusDorea
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Dorea
Related genes
Preview from the same derived genome key