1 PilJ#1
37-123 aa · 87 aa · 8.3% of protein
Raw token
PilJ:37:0.0000155:123:98:112P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DW152_RS06045
Histidine kinase, Hybrid
Dorea sp. AM13-35 · GCF_003473885
ClassHKTypeHybridLength1051 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_003473885#DW152_RS06045Stable P2CS identifier used across views.
GenomeGCF_003473885Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Dorea
Domain signature
Compact overview inferred from the domain field
PilJGGDEFHisKAHATPase_cResponse_reg
Protein length1051 aaLength used to scale native and Biotite-like views.
Annotated domains55 with usable coordinates.
Domain coverage538 / 1051 aa (51.2%)Merged over positioned domains only.
Domain description1 PilJ,1 GGDEF,1 HisKA,1 HATPase_c,1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa1051 aa
Domain-by-domain annotation5 items
2 GGDEF#2
202-351 aa · 150 aa · 14.3% of protein
Raw token
GGDEF:202:9.36e-23:351:157:1603 HisKA#3
676-742 aa · 67 aa · 6.4% of protein
Raw token
HisKA:676:0.000000000000215:742:67:644 HATPase_c#4
789-906 aa · 118 aa · 11.2% of protein
Raw token
HATPase_c:789:2.97e-24:906:118:1095 Response_reg#5
931-1046 aa · 116 aa · 11.0% of protein
Raw token
Response_reg:931:2.67e-28:1046:116:111- Raw architecture: PilJ:37:0.0000155:123:98:112#GGDEF:202:9.36e-23:351:157:160#HisKA:676:0.000000000000215:742:67:64#HATPase_c:789:2.97e-24:906:118:109#Response_reg:931:2.67e-28:1046:116:111
- Domain description: 1 PilJ,1 GGDEF,1 HisKA,1 HATPase_c,1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_003473885::NZ_QUCZ01000004.1::G00016
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span68337-71492Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDW152_06050RefSeq proteinWP_243059828.1
Context group ID
GCF_003473885::NZ_QUCZ01000004.1::G00016Context members
DW152_RS06045
Partner locus tags
DW152_RS06045
Partner old locus tags
DW152_06050
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_243059828.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDW152_RS06045Primary locus identifier stored in the genes table.
Old locus tagDW152_06050Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QUCZ01000004.1Sequence record reported by the local genomic context database.
Genomic interval68 337-71 492 nt3 156 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span68 337-71 492 ntGCF_003473885::NZ_QUCZ01000004.1::G00016
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003473885::NZ_QUCZ01000004.1::G00016Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QUCZ01000004.1All displayed genes belong to this local TCS context.
Neighborhood span68 337-71 492 nt3 156 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
68 337 nt71 492 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
DW152_RS06045GCF_003473885#DW152_RS06045
HKHybridCurrent focus
68 337-71 492 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003473885#DW152_RS06045The current gene is the representative for this cluster.
PFAM architectureGGDEF + HisKA + HATPase_c + Response_reg4 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0258583
Simplified PFAM architecture for HKOC_0258583
PFAM domain coverage: 448 / 1051 aa (42.6%)
1 aa1051 aa
GGDEFHisKAHATPase_cResponse_reg
- Simplified architecture: GGDEF + HisKA + HATPase_c + Response_reg
- Raw architecture: GGDEF[202-352] | HisKA[676-742] | HATPase_c[790-906] | Response_reg[931-1043]
- Domain count: 4
- Matched identifier: HKOC_0258583
- Positioned domains: GGDEF 202-352 ; HisKA 676-742 ; HATPase_c 790-906 ; Response_reg 931-1043
Cluster members and taxonomy
Representative gene: GCF_003473885#DW152_RS06045
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 293 099 · GCF_003473885
AssemblyASM347388v1 · Scaffoldhaploid
Genome composition2 785 699 bp · 41,5% GCDorea sp. AM13-35
Signal transduction countsGenes 59 · HK 31 · RR 27CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusDorea
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Dorea
Related genes
Preview from the same derived genome key