1 HisKA#1
35-89 aa · 55 aa · 22.0% of protein
Raw token
HisKA:35:0.00000000762:89:55:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DW152_RS05555
Histidine kinase, Classic
Dorea sp. AM13-35 · GCF_003473885
ClassHKTypeClassicLength250 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_003473885#DW152_RS05555Stable P2CS identifier used across views.
GenomeGCF_003473885Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Dorea
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length250 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage169 / 250 aa (67.6%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa250 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
137-250 aa · 114 aa · 45.6% of protein
Raw token
HATPase_c:137:3.8e-32:250:117:109- Raw architecture: HisKA:35:0.00000000762:89:55:64#HATPase_c:137:3.8e-32:250:117:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_003473885::NZ_QUCZ01000003.1::G00015
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span263615-264367Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDW152_05555RefSeq proteinWP_021860443.1
Context group ID
GCF_003473885::NZ_QUCZ01000003.1::G00015Context members
DW152_RS05555
Partner locus tags
DW152_RS05555
Partner old locus tags
DW152_05555
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_021860443.1Primary protein accession used for annex mappings.
UniProt accessionA0ABR7ES80Primary UniProt accession resolved in the annex database.
UniProt IDA0ABR7ES80_9FIRMDisplay identifier provided by UniProt.
GO / PubMed1 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDW152_RS05555Primary locus identifier stored in the genes table.
Old locus tagDW152_05555Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QUCZ01000003.1Sequence record reported by the local genomic context database.
Genomic interval263 615-264 367 nt753 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span263 615-264 367 ntGCF_003473885::NZ_QUCZ01000003.1::G00015
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003473885::NZ_QUCZ01000003.1::G00015Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QUCZ01000003.1All displayed genes belong to this local TCS context.
Neighborhood span263 615-264 367 nt753 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
263 615 nt264 367 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
DW152_RS05555GCF_003473885#DW152_RS05555
HKClassicCurrent focus
263 615-264 367 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003473885#DW152_RS05555The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2919079
Simplified PFAM architecture for HKOC_2919079
PFAM domain coverage: 169 / 250 aa (67.6%)
1 aa250 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[34-90] | HATPase_c[138-249]
- Domain count: 2
- Matched identifier: HKOC_2919079
- Positioned domains: HisKA 34-90 ; HATPase_c 138-249
Cluster members and taxonomy
Representative gene: GCF_003473885#DW152_RS05555
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 293 099 · GCF_003473885
AssemblyASM347388v1 · Scaffoldhaploid
Genome composition2 785 699 bp · 41,5% GCDorea sp. AM13-35
Signal transduction countsGenes 59 · HK 31 · RR 27CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusDorea
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Dorea
Related genes
Preview from the same derived genome key