1 HisKA#1
315-381 aa · 67 aa · 9.7% of protein
Raw token
HisKA:315:0.00000000000000354:381:67:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DW152_RS04820
Histidine kinase, Hybrid
Dorea sp. AM13-35 · GCF_003473885
ClassHKTypeHybridLength694 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_003473885#DW152_RS04820Stable P2CS identifier used across views.
GenomeGCF_003473885Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Dorea
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_cResponse_reg
Protein length694 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage301 / 694 aa (43.4%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_c,1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa694 aa
Domain-by-domain annotation3 items
2 HATPase_c#2
430-546 aa · 117 aa · 16.9% of protein
Raw token
HATPase_c:430:1.85e-27:546:117:1093 Response_reg#3
571-687 aa · 117 aa · 16.9% of protein
Raw token
Response_reg:571:1.16e-24:687:117:111- Raw architecture: HisKA:315:0.00000000000000354:381:67:64#HATPase_c:430:1.85e-27:546:117:109#Response_reg:571:1.16e-24:687:117:111
- Domain description: 1 HisKA,1 HATPase_c,1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_003473885::NZ_QUCZ01000003.1::G00013
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span104675-106759Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDW152_04820RefSeq proteinWP_243059800.1
Context group ID
GCF_003473885::NZ_QUCZ01000003.1::G00013Context members
DW152_RS04820
Partner locus tags
DW152_RS04820
Partner old locus tags
DW152_04820
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_243059800.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDW152_RS04820Primary locus identifier stored in the genes table.
Old locus tagDW152_04820Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QUCZ01000003.1Sequence record reported by the local genomic context database.
Genomic interval104 675-106 759 nt2 085 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span104 675-106 759 ntGCF_003473885::NZ_QUCZ01000003.1::G00013
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003473885::NZ_QUCZ01000003.1::G00013Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QUCZ01000003.1All displayed genes belong to this local TCS context.
Neighborhood span104 675-106 759 nt2 085 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
104 675 nt106 759 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
DW152_RS04820GCF_003473885#DW152_RS04820
HKHybridCurrent focus
104 675-106 759 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003473885#DW152_RS04820The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c + Response_reg3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0782844
Simplified PFAM architecture for HKOC_0782844
PFAM domain coverage: 298 / 694 aa (42.9%)
1 aa694 aa
HisKAHATPase_cResponse_reg
- Simplified architecture: HisKA + HATPase_c + Response_reg
- Raw architecture: HisKA[315-381] | HATPase_c[432-546] | Response_reg[571-686]
- Domain count: 3
- Matched identifier: HKOC_0782844
- Positioned domains: HisKA 315-381 ; HATPase_c 432-546 ; Response_reg 571-686
Cluster members and taxonomy
Representative gene: GCF_003473885#DW152_RS04820
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 293 099 · GCF_003473885
AssemblyASM347388v1 · Scaffoldhaploid
Genome composition2 785 699 bp · 41,5% GCDorea sp. AM13-35
Signal transduction countsGenes 59 · HK 31 · RR 27CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusDorea
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Dorea
Related genes
Preview from the same derived genome key