1 Response_reg#1
6-118 aa · 113 aa · 21.2% of protein
Raw token
Response_reg:6:1.11e-30:118:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DW152_RS04025
Response regulator, unclassified
Dorea sp. AM13-35 · GCF_003473885
ClassRRTypeunclassifiedLength532 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003473885#DW152_RS04025Stable P2CS identifier used across views.
GenomeGCF_003473885Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Dorea
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length532 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage185 / 532 aa (34.8%)Merged over positioned domains only.
Domain description1 Response_reg,2 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa532 aa
Domain-by-domain annotation3 items
2 HTH_AraC#2
432-473 aa · 42 aa · 7.9% of protein
Raw token
HTH_AraC:432:0.0000000021:473:42:423 HTH_AraC#3
495-524 aa · 30 aa · 5.6% of protein
Raw token
HTH_AraC:495:0.0000922:524:30:42- Raw architecture: Response_reg:6:1.11e-30:118:113:111#HTH_AraC:432:0.0000000021:473:42:42#HTH_AraC:495:0.0000922:524:30:42
- Domain description: 1 Response_reg,2 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003473885::NZ_QUCZ01000002.1::G00011
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span231148-234475Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDW152_04025RefSeq proteinWP_021860069.1
Context group ID
GCF_003473885::NZ_QUCZ01000002.1::G00011Context members
DW152_RS04020DW152_RS04025
Partner locus tags
DW152_RS04020DW152_RS04025
Partner old locus tags
DW152_04020DW152_04025
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_021860069.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDW152_RS04025Primary locus identifier stored in the genes table.
Old locus tagDW152_04025Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QUCZ01000002.1Sequence record reported by the local genomic context database.
Genomic interval232 877-234 475 nt1 599 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span231 148-234 475 ntGCF_003473885::NZ_QUCZ01000002.1::G00011
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003473885::NZ_QUCZ01000002.1::G00011Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QUCZ01000002.1All displayed genes belong to this local TCS context.
Neighborhood span231 148-234 475 nt3 328 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
231 148 nt234 475 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DW152_RS04020GCF_003473885#DW152_RS04020
HKClassic
231 148-232 887 nt · Reverse (-)
DW152_RS04025GCF_003473885#DW152_RS04025
RRunclassifiedCurrent focus
232 877-234 475 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003473885#DW152_RS04025The current gene is the representative for this cluster.
PFAM architectureResponse_reg + HTH_182 domains in the representative PFAM annotation.
PFAM architecture for RROC_0108272
Simplified PFAM architecture for RROC_0108272
PFAM domain coverage: 191 / 532 aa (35.9%)
1 aa532 aa
Response_regHTH_18
- Simplified architecture: Response_reg + HTH_18
- Raw architecture: Response_reg[6-118] | HTH_18[447-524]
- Domain count: 2
- Matched identifier: RROC_0108272
- Positioned domains: Response_reg 6-118 ; Response_reg 6-118 ; HTH_18 447-524 ; HTH_18 447-524
Cluster members and taxonomy
Representative gene: GCF_003473885#DW152_RS04025
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 293 099 · GCF_003473885
AssemblyASM347388v1 · Scaffoldhaploid
Genome composition2 785 699 bp · 41,5% GCDorea sp. AM13-35
Signal transduction countsGenes 59 · HK 31 · RR 27CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusDorea
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Dorea
Related genes
Preview from the same derived genome key