1 dCache_1#1
88-269 aa · 182 aa · 31.4% of protein
Raw token
dCache_1:88:0.0000000029:269:191:195P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DW152_RS04020
Histidine kinase, Classic
Dorea sp. AM13-35 · GCF_003473885
ClassHKTypeClassicLength579 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003473885#DW152_RS04020Stable P2CS identifier used across views.
GenomeGCF_003473885Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Dorea
Domain signature
Compact overview inferred from the domain field
dCache_1HAMPHis_kinaseHATPase_c
Protein length579 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage434 / 579 aa (75.0%)Merged over positioned domains only.
Domain description1 dCache_1,1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa579 aa
Domain-by-domain annotation4 items
2 HAMP#2
286-355 aa · 70 aa · 12.1% of protein
Raw token
HAMP:286:0.000000000694:355:70:693 His_kinase#3
370-449 aa · 80 aa · 13.8% of protein
Raw token
His_kinase:370:5.42e-34:449:80:804 HATPase_c#4
469-570 aa · 102 aa · 17.6% of protein
Raw token
HATPase_c:469:4.41e-16:570:105:109- Raw architecture: dCache_1:88:0.0000000029:269:191:195#HAMP:286:0.000000000694:355:70:69#His_kinase:370:5.42e-34:449:80:80#HATPase_c:469:4.41e-16:570:105:109
- Domain description: 1 dCache_1,1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003473885::NZ_QUCZ01000002.1::G00011
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span231148-234475Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDW152_04020RefSeq proteinWP_118288015.1
Context group ID
GCF_003473885::NZ_QUCZ01000002.1::G00011Context members
DW152_RS04020DW152_RS04025
Partner locus tags
DW152_RS04020DW152_RS04025
Partner old locus tags
DW152_04020DW152_04025
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_118288015.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDW152_RS04020Primary locus identifier stored in the genes table.
Old locus tagDW152_04020Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QUCZ01000002.1Sequence record reported by the local genomic context database.
Genomic interval231 148-232 887 nt1 740 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span231 148-234 475 ntGCF_003473885::NZ_QUCZ01000002.1::G00011
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003473885::NZ_QUCZ01000002.1::G00011Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QUCZ01000002.1All displayed genes belong to this local TCS context.
Neighborhood span231 148-234 475 nt3 328 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
231 148 nt234 475 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DW152_RS04020GCF_003473885#DW152_RS04020
HKClassicCurrent focus
231 148-232 887 nt · Reverse (-)
DW152_RS04025GCF_003473885#DW152_RS04025
RRunclassified
232 877-234 475 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003473885#DW152_RS04020The current gene is the representative for this cluster.
PFAM architectureHAMP + His_kinase + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1168411
Simplified PFAM architecture for HKOC_1168411
PFAM domain coverage: 233 / 579 aa (40.2%)
1 aa579 aa
HAMPHis_kinaseHATPase_c
- Simplified architecture: HAMP + His_kinase + HATPase_c
- Raw architecture: HAMP[304-354] | His_kinase[371-449] | HATPase_c[469-571]
- Domain count: 3
- Matched identifier: HKOC_1168411
- Positioned domains: HAMP 304-354 ; His_kinase 371-449 ; HATPase_c 469-571
Cluster members and taxonomy
Representative gene: GCF_003473885#DW152_RS04020
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 293 099 · GCF_003473885
AssemblyASM347388v1 · Scaffoldhaploid
Genome composition2 785 699 bp · 41,5% GCDorea sp. AM13-35
Signal transduction countsGenes 59 · HK 31 · RR 27CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusDorea
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Dorea
Related genes
Preview from the same derived genome key