1 Response_reg#1
7-116 aa · 110 aa · 38.9% of protein
Raw token
Response_reg:7:1.5e-19:116:110:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DW152_RS03920
Response regulator, unclassified
Dorea sp. AM13-35 · GCF_003473885
ClassRRTypeunclassifiedLength283 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_003473885#DW152_RS03920Stable P2CS identifier used across views.
GenomeGCF_003473885Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Dorea
Domain signature
Compact overview inferred from the domain field
Response_regYcbB
Protein length283 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage230 / 283 aa (81.3%)Merged over positioned domains only.
Domain description1 Response_reg,1 YcbBSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa283 aa
Domain-by-domain annotation2 items
2 YcbB#2
156-275 aa · 120 aa · 42.4% of protein
Raw token
YcbB:156:2.77e-39:275:131:131- Raw architecture: Response_reg:7:1.5e-19:116:110:111#YcbB:156:2.77e-39:275:131:131
- Domain description: 1 Response_reg,1 YcbB
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_003473885::NZ_QUCZ01000002.1::G00010
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span209065-209916Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDW152_03920RefSeq proteinWP_021859657.1
Context group ID
GCF_003473885::NZ_QUCZ01000002.1::G00010Context members
DW152_RS03920
Partner locus tags
DW152_RS03920
Partner old locus tags
DW152_03920
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_021859657.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDW152_RS03920Primary locus identifier stored in the genes table.
Old locus tagDW152_03920Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QUCZ01000002.1Sequence record reported by the local genomic context database.
Genomic interval209 065-209 916 nt852 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span209 065-209 916 ntGCF_003473885::NZ_QUCZ01000002.1::G00010
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003473885::NZ_QUCZ01000002.1::G00010Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QUCZ01000002.1All displayed genes belong to this local TCS context.
Neighborhood span209 065-209 916 nt852 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
209 065 nt209 916 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
DW152_RS03920GCF_003473885#DW152_RS03920
RRunclassifiedCurrent focus
209 065-209 916 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003473885#DW152_RS03920The current gene is the representative for this cluster.
PFAM architectureResponse_reg + YcbB2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0593615
Simplified PFAM architecture for RROC_0593615
PFAM domain coverage: 228 / 283 aa (80.6%)
1 aa283 aa
Response_regYcbB
- Simplified architecture: Response_reg + YcbB
- Raw architecture: Response_reg[7-115] | YcbB[157-275]
- Domain count: 2
- Matched identifier: RROC_0593615
- Positioned domains: Response_reg 7-115 ; Response_reg 7-115 ; YcbB 157-275 ; YcbB 157-275
Cluster members and taxonomy
Representative gene: GCF_003473885#DW152_RS03920
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 293 099 · GCF_003473885
AssemblyASM347388v1 · Scaffoldhaploid
Genome composition2 785 699 bp · 41,5% GCDorea sp. AM13-35
Signal transduction countsGenes 59 · HK 31 · RR 27CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusDorea
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Dorea
Related genes
Preview from the same derived genome key