1 Response_reg#1
3-119 aa · 117 aa · 35.0% of protein
Raw token
Response_reg:3:5.03e-30:119:117:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DW142_RS05695
Response regulator, unclassified
Mediterraneibacter gnavus · GCF_003473185
ClassRRTypeunclassifiedLength334 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003473185#DW142_RS05695Stable P2CS identifier used across views.
GenomeGCF_003473185Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length334 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage190 / 334 aa (56.9%)Merged over positioned domains only.
Domain description1 Response_reg,2 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa334 aa
Domain-by-domain annotation3 items
2 HTH_AraC#2
241-277 aa · 37 aa · 11.1% of protein
Raw token
HTH_AraC:241:0.0000000103:277:37:423 HTH_AraC#3
294-329 aa · 36 aa · 10.8% of protein
Raw token
HTH_AraC:294:0.00000119:329:36:42- Raw architecture: Response_reg:3:5.03e-30:119:117:111#HTH_AraC:241:0.0000000103:277:37:42#HTH_AraC:294:0.00000119:329:36:42
- Domain description: 1 Response_reg,2 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003473185::NZ_QRLN01000005.1::G00039
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span176037-178836Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDW142_05695RefSeq proteinWP_118341421.1
Context group ID
GCF_003473185::NZ_QRLN01000005.1::G00039Context members
DW142_RS05695DW142_RS05700
Partner locus tags
DW142_RS05695DW142_RS05700
Partner old locus tags
DW142_05695DW142_05700
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_118341421.1Primary protein accession used for annex mappings.
UniProt accessionA0A8B3BUV0Primary UniProt accession resolved in the annex database.
UniProt IDA0A8B3BUV0_MEDGNDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDW142_RS05695Primary locus identifier stored in the genes table.
Old locus tagDW142_05695Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QRLN01000005.1Sequence record reported by the local genomic context database.
Genomic interval176 037-177 041 nt1 005 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span176 037-178 836 ntGCF_003473185::NZ_QRLN01000005.1::G00039
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003473185::NZ_QRLN01000005.1::G00039Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QRLN01000005.1All displayed genes belong to this local TCS context.
Neighborhood span176 037-178 836 nt2 800 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
176 037 nt178 836 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DW142_RS05695GCF_003473185#DW142_RS05695
RRunclassifiedCurrent focus
176 037-177 041 nt · Reverse (-)
DW142_RS05700GCF_003473185#DW142_RS05700
HKClassic
177 022-178 836 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003473185#DW142_RS05695The current gene is the representative for this cluster.
PFAM architectureResponse_reg + HTH_182 domains in the representative PFAM annotation.
PFAM architecture for RROC_0513624
Simplified PFAM architecture for RROC_0513624
PFAM domain coverage: 187 / 334 aa (56.0%)
1 aa334 aa
Response_regHTH_18
- Simplified architecture: Response_reg + HTH_18
- Raw architecture: Response_reg[3-111] | HTH_18[252-329]
- Domain count: 2
- Matched identifier: RROC_0513624
- Positioned domains: Response_reg 3-111 ; Response_reg 3-111 ; HTH_18 252-329 ; HTH_18 252-329
Cluster members and taxonomy
Representative gene: GCF_003473185#DW142_RS05695
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 33 038 · GCF_003473185
AssemblyASM347318v1 · Scaffoldhaploid
Genome composition3 176 643 bp · 43,0% GCMediterraneibacter gnavus
Signal transduction countsGenes 80 · HK 38 · RR 41CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key