1 Response_reg#1
4-113 aa · 110 aa · 47.0% of protein
Raw token
Response_reg:4:1.27e-36:113:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DW147_RS01140
Response regulator OmpR family
Bifidobacterium adolescentis · GCF_003473105
ClassRRTypeOmpRLength234 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003473105#DW147_RS01140Stable P2CS identifier used across views.
GenomeGCF_003473105Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length234 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage187 / 234 aa (79.9%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa234 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
153-229 aa · 77 aa · 32.9% of protein
Raw token
Trans_reg_C:153:5.28e-33:229:77:77- Raw architecture: Response_reg:4:1.27e-36:113:111:111#Trans_reg_C:153:5.28e-33:229:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003473105::NZ_QRLI01000001.1::G00002
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span286351-288464Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDW147_01130RefSeq proteinWP_085345772.1
Context group ID
GCF_003473105::NZ_QRLI01000001.1::G00002Context members
DW147_RS01135DW147_RS01140
Partner locus tags
DW147_RS01135DW147_RS01140
Partner old locus tags
DW147_01125DW147_01130
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_085345772.1Primary protein accession used for annex mappings.
UniProt accessionA0A1X2ZK83Primary UniProt accession resolved in the annex database.
UniProt IDA0A1X2ZK83_BIFADDisplay identifier provided by UniProt.
GO / PubMed5 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDW147_RS01140Primary locus identifier stored in the genes table.
Old locus tagDW147_01130Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QRLI01000001.1Sequence record reported by the local genomic context database.
Genomic interval287 760-288 464 nt705 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span286 351-288 464 ntGCF_003473105::NZ_QRLI01000001.1::G00002
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003473105::NZ_QRLI01000001.1::G00002Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QRLI01000001.1All displayed genes belong to this local TCS context.
Neighborhood span286 351-288 464 nt2 114 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
286 351 nt288 464 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DW147_RS01135GCF_003473105#DW147_RS01135
HKClassic
286 351-287 760 nt · Forward (+)
DW147_RS01140GCF_003473105#DW147_RS01140
RROmpRCurrent focus
287 760-288 464 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002108035#B0703_RS01530Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1053138
Simplified PFAM architecture for RROC_1053138
PFAM domain coverage: 184 / 234 aa (78.6%)
1 aa234 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-113] | Trans_reg_C[155-228]
- Domain count: 2
- Matched identifier: RROC_1053138
- Positioned domains: Response_reg 4-113 ; Response_reg 4-113 ; Trans_reg_C 155-228 ; Trans_reg_C 155-228
Cluster members and taxonomy
Representative gene: GCF_002108035#B0703_RS01530
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 680 · GCF_003473105
AssemblyASM347310v1 · Scaffoldhaploid
Genome composition2 263 245 bp · 59,5% GCBifidobacterium adolescentis
Signal transduction countsGenes 26 · HK 11 · RR 14CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key