1 Response_reg#1
4-109 aa · 106 aa · 48.2% of protein
Raw token
Response_reg:4:5.63e-31:109:110:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DW153_RS16105
Response regulator OmpR family
Mediterraneibacter gnavus · GCF_003473045
ClassRRTypeOmpRLength220 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_003473045#DW153_RS16105Stable P2CS identifier used across views.
GenomeGCF_003473045Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length220 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage181 / 220 aa (82.3%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa220 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
144-218 aa · 75 aa · 34.1% of protein
Raw token
Trans_reg_C:144:6.22e-24:218:76:77- Raw architecture: Response_reg:4:5.63e-31:109:110:111#Trans_reg_C:144:6.22e-24:218:76:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_003473045::NZ_QRLD01000042.1::G00042
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span3894-4556Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDW153_16095RefSeq proteinWP_004844249.1
Context group ID
GCF_003473045::NZ_QRLD01000042.1::G00042Context members
DW153_RS16105
Partner locus tags
DW153_RS16105
Partner old locus tags
DW153_16095
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_004844249.1Primary protein accession used for annex mappings.
UniProt accessionA7B6R2Primary UniProt accession resolved in the annex database.
UniProt IDA7B6R2_MEDG7Display identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDW153_RS16105Primary locus identifier stored in the genes table.
Old locus tagDW153_16095Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QRLD01000042.1Sequence record reported by the local genomic context database.
Genomic interval3 894-4 556 nt663 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span3 894-4 556 ntGCF_003473045::NZ_QRLD01000042.1::G00042
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003473045::NZ_QRLD01000042.1::G00042Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QRLD01000042.1All displayed genes belong to this local TCS context.
Neighborhood span3 894-4 556 nt663 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
3 894 nt4 556 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
DW153_RS16105GCF_003473045#DW153_RS16105
RROmpRCurrent focus
3 894-4 556 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000169475#RUMGNA_RS14370Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1723117
Simplified PFAM architecture for RROC_1723117
PFAM domain coverage: 181 / 220 aa (82.3%)
1 aa220 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-109] | Trans_reg_C[144-218]
- Domain count: 2
- Matched identifier: RROC_1723117
- Positioned domains: Response_reg 4-109 ; Response_reg 4-109 ; Trans_reg_C 144-218 ; Trans_reg_C 144-218
Cluster members and taxonomy
Representative gene: GCF_000169475#RUMGNA_RS14370
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 33 038 · GCF_003473045
AssemblyASM347304v1 · Scaffoldhaploid
Genome composition3 323 923 bp · 42,5% GCMediterraneibacter gnavus
Signal transduction countsGenes 84 · HK 41 · RR 42CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key