1 HAMP#1
122-191 aa · 70 aa · 16.8% of protein
Raw token
HAMP:122:0.00000000201:191:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DW153_RS15670
Histidine kinase, Classic
Mediterraneibacter gnavus · GCF_003473045
ClassHKTypeClassicLength417 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003473045#DW153_RS15670Stable P2CS identifier used across views.
GenomeGCF_003473045Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
HAMPHis_kinaseHATPase_c
Protein length417 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage252 / 417 aa (60.4%)Merged over positioned domains only.
Domain description1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa417 aa
Domain-by-domain annotation3 items
2 His_kinase#2
206-286 aa · 81 aa · 19.4% of protein
Raw token
His_kinase:206:6.53e-23:286:81:803 HATPase_c#3
309-409 aa · 101 aa · 24.2% of protein
Raw token
HATPase_c:309:0.000000000000242:409:105:109- Raw architecture: HAMP:122:0.00000000201:191:70:69#His_kinase:206:6.53e-23:286:81:80#HATPase_c:309:0.000000000000242:409:105:109
- Domain description: 1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003473045::NZ_QRLD01000033.1::G00034
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span20035-22346Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDW153_15660RefSeq proteinWP_243037748.1
Context group ID
GCF_003473045::NZ_QRLD01000033.1::G00034Context members
DW153_RS15665DW153_RS15670
Partner locus tags
DW153_RS15665DW153_RS15670
Partner old locus tags
DW153_15655DW153_15660
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_243037748.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDW153_RS15670Primary locus identifier stored in the genes table.
Old locus tagDW153_15660Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QRLD01000033.1Sequence record reported by the local genomic context database.
Genomic interval21 093-22 346 nt1 254 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span20 035-22 346 ntGCF_003473045::NZ_QRLD01000033.1::G00034
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003473045::NZ_QRLD01000033.1::G00034Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QRLD01000033.1All displayed genes belong to this local TCS context.
Neighborhood span20 035-22 346 nt2 312 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
20 035 nt22 346 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DW153_RS15665GCF_003473045#DW153_RS15665
RRunclassified
20 035-21 105 nt · Reverse (-)
DW153_RS15670GCF_003473045#DW153_RS15670
HKClassicCurrent focus
21 093-22 346 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000169475#RUMGNA_RS16720Use this link to inspect the representative gene detail.
PFAM architectureHis_kinase + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1147261
Simplified PFAM architecture for HKOC_1147261
PFAM domain coverage: 183 / 583 aa (31.4%)
1 aa583 aa
His_kinaseHATPase_c
- Simplified architecture: His_kinase + HATPase_c
- Raw architecture: His_kinase[372-451] | HATPase_c[472-574]
- Domain count: 2
- Matched identifier: HKOC_1147261
- Positioned domains: His_kinase 372-451 ; HATPase_c 472-574
Cluster members and taxonomy
Representative gene: GCF_000169475#RUMGNA_RS16720
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 33 038 · GCF_003473045
AssemblyASM347304v1 · Scaffoldhaploid
Genome composition3 323 923 bp · 42,5% GCMediterraneibacter gnavus
Signal transduction countsGenes 84 · HK 41 · RR 42CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key