1 HAMP#1
89-159 aa · 71 aa · 18.4% of protein
Raw token
HAMP:89:0.0000000000365:159:71:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DW153_RS13670
Histidine kinase, Classic
Mediterraneibacter gnavus · GCF_003473045
ClassHKTypeClassicLength385 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_003473045#DW153_RS13670Stable P2CS identifier used across views.
GenomeGCF_003473045Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length385 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage247 / 385 aa (64.2%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa385 aa
Domain-by-domain annotation3 items
2 HisKA#2
164-230 aa · 67 aa · 17.4% of protein
Raw token
HisKA:164:0.000000000423:230:67:643 HATPase_c#3
272-380 aa · 109 aa · 28.3% of protein
Raw token
HATPase_c:272:1.74e-31:380:109:109- Raw architecture: HAMP:89:0.0000000000365:159:71:69#HisKA:164:0.000000000423:230:67:64#HATPase_c:272:1.74e-31:380:109:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_003473045::NZ_QRLD01000021.1::G00025
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span31797-32954Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDW153_13660RefSeq proteinWP_117500814.1
Context group ID
GCF_003473045::NZ_QRLD01000021.1::G00025Context members
DW153_RS13670
Partner locus tags
DW153_RS13670
Partner old locus tags
DW153_13660
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_117500814.1Primary protein accession used for annex mappings.
UniProt accessionA0ABR7FIZ7Primary UniProt accession resolved in the annex database.
UniProt IDA0ABR7FIZ7_9FIRMDisplay identifier provided by UniProt.
GO / PubMed1 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDW153_RS13670Primary locus identifier stored in the genes table.
Old locus tagDW153_13660Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QRLD01000021.1Sequence record reported by the local genomic context database.
Genomic interval31 797-32 954 nt1 158 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span31 797-32 954 ntGCF_003473045::NZ_QRLD01000021.1::G00025
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003473045::NZ_QRLD01000021.1::G00025Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QRLD01000021.1All displayed genes belong to this local TCS context.
Neighborhood span31 797-32 954 nt1 158 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
31 797 nt32 954 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
DW153_RS13670GCF_003473045#DW153_RS13670
HKClassicCurrent focus
31 797-32 954 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003464875#DWV82_RS03270Use this link to inspect the representative gene detail.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2566615
Simplified PFAM architecture for HKOC_2566615
PFAM domain coverage: 226 / 385 aa (58.7%)
1 aa385 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[106-158] | HisKA[164-229] | HATPase_c[275-381]
- Domain count: 3
- Matched identifier: HKOC_2566615
- Positioned domains: HAMP 106-158 ; HisKA 164-229 ; HATPase_c 275-381
Cluster members and taxonomy
Representative gene: GCF_003464875#DWV82_RS03270
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 33 038 · GCF_003473045
AssemblyASM347304v1 · Scaffoldhaploid
Genome composition3 323 923 bp · 42,5% GCMediterraneibacter gnavus
Signal transduction countsGenes 84 · HK 41 · RR 42CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key