1 Response_reg#1
6-115 aa · 110 aa · 46.8% of protein
Raw token
Response_reg:6:9.3e-36:115:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DW153_RS13025
Response regulator OmpR family
Mediterraneibacter gnavus · GCF_003473045
ClassRRTypeOmpRLength235 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003473045#DW153_RS13025Stable P2CS identifier used across views.
GenomeGCF_003473045Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length235 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage188 / 235 aa (80.0%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa235 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
154-231 aa · 78 aa · 33.2% of protein
Raw token
Trans_reg_C:154:4.11e-30:231:78:77- Raw architecture: Response_reg:6:9.3e-36:115:111:111#Trans_reg_C:154:4.11e-30:231:78:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003473045::NZ_QRLD01000019.1::G00020
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span20544-22497Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDW153_13020RefSeq proteinWP_004841454.1
Context group ID
GCF_003473045::NZ_QRLD01000019.1::G00020Context members
DW153_RS13020DW153_RS13025
Partner locus tags
DW153_RS13020DW153_RS13025
Partner old locus tags
DW153_13015DW153_13020
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_004841454.1Primary protein accession used for annex mappings.
UniProt accessionA7B096Primary UniProt accession resolved in the annex database.
UniProt IDA7B096_MEDG7Display identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDW153_RS13025Primary locus identifier stored in the genes table.
Old locus tagDW153_13020Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QRLD01000019.1Sequence record reported by the local genomic context database.
Genomic interval21 790-22 497 nt708 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span20 544-22 497 ntGCF_003473045::NZ_QRLD01000019.1::G00020
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003473045::NZ_QRLD01000019.1::G00020Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QRLD01000019.1All displayed genes belong to this local TCS context.
Neighborhood span20 544-22 497 nt1 954 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
20 544 nt22 497 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DW153_RS13020GCF_003473045#DW153_RS13020
HKClassic
20 544-21 818 nt · Reverse (-)
DW153_RS13025GCF_003473045#DW153_RS13025
RROmpRCurrent focus
21 790-22 497 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000169475#RUMGNA_RS04265Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1016870
Simplified PFAM architecture for RROC_1016870
PFAM domain coverage: 188 / 235 aa (80.0%)
1 aa235 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[6-115] | Trans_reg_C[154-231]
- Domain count: 2
- Matched identifier: RROC_1016870
- Positioned domains: Response_reg 6-115 ; Response_reg 6-115 ; Trans_reg_C 154-231 ; Trans_reg_C 154-231
Cluster members and taxonomy
Representative gene: GCF_000169475#RUMGNA_RS04265
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 33 038 · GCF_003473045
AssemblyASM347304v1 · Scaffoldhaploid
Genome composition3 323 923 bp · 42,5% GCMediterraneibacter gnavus
Signal transduction countsGenes 84 · HK 41 · RR 42CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key