1 HisKA#1
77-146 aa · 70 aa · 23.5% of protein
Raw token
HisKA:77:0.0000000000009:146:70:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DW153_RS09640
Histidine kinase, Classic
Mediterraneibacter gnavus · GCF_003473045
ClassHKTypeClassicLength298 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_003473045#DW153_RS09640Stable P2CS identifier used across views.
GenomeGCF_003473045Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length298 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage175 / 298 aa (58.7%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa298 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
192-296 aa · 105 aa · 35.2% of protein
Raw token
HATPase_c:192:0.00000000000000138:296:113:109- Raw architecture: HisKA:77:0.0000000000009:146:70:64#HATPase_c:192:0.00000000000000138:296:113:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_003473045::NZ_QRLD01000010.1::G00008
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span45946-46842Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDW153_09640RefSeq proteinWP_118006172.1
Context group ID
GCF_003473045::NZ_QRLD01000010.1::G00008Context members
DW153_RS09640
Partner locus tags
DW153_RS09640
Partner old locus tags
DW153_09640
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_118006172.1Primary protein accession used for annex mappings.
UniProt accessionA0AAP3SZ67Primary UniProt accession resolved in the annex database.
UniProt IDA0AAP3SZ67_MEDGNDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDW153_RS09640Primary locus identifier stored in the genes table.
Old locus tagDW153_09640Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QRLD01000010.1Sequence record reported by the local genomic context database.
Genomic interval45 946-46 842 nt897 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span45 946-46 842 ntGCF_003473045::NZ_QRLD01000010.1::G00008
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003473045::NZ_QRLD01000010.1::G00008Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QRLD01000010.1All displayed genes belong to this local TCS context.
Neighborhood span45 946-46 842 nt897 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
45 946 nt46 842 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
DW153_RS09640GCF_003473045#DW153_RS09640
HKClassicCurrent focus
45 946-46 842 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000169475#RUMGNA_RS05820Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2883196
Simplified PFAM architecture for HKOC_2883196
PFAM domain coverage: 161 / 304 aa (53.0%)
1 aa304 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[87-146] | HATPase_c[193-293]
- Domain count: 2
- Matched identifier: HKOC_2883196
- Positioned domains: HisKA 87-146 ; HATPase_c 193-293
Cluster members and taxonomy
Representative gene: GCF_000169475#RUMGNA_RS05820
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 33 038 · GCF_003473045
AssemblyASM347304v1 · Scaffoldhaploid
Genome composition3 323 923 bp · 42,5% GCMediterraneibacter gnavus
Signal transduction countsGenes 84 · HK 41 · RR 42CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key