1 HAMP#1
154-227 aa · 74 aa · 16.2% of protein
Raw token
HAMP:154:0.00000000000000329:227:74:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DW153_RS05710
Histidine kinase, Classic
Mediterraneibacter gnavus · GCF_003473045
ClassHKTypeClassicLength457 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003473045#DW153_RS05710Stable P2CS identifier used across views.
GenomeGCF_003473045Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length457 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage250 / 457 aa (54.7%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa457 aa
Domain-by-domain annotation3 items
2 HisKA#2
233-297 aa · 65 aa · 14.2% of protein
Raw token
HisKA:233:0.000000000000023:297:65:643 HATPase_c#3
343-453 aa · 111 aa · 24.3% of protein
Raw token
HATPase_c:343:3.21e-28:453:111:109- Raw architecture: HAMP:154:0.00000000000000329:227:74:69#HisKA:233:0.000000000000023:297:65:64#HATPase_c:343:3.21e-28:453:111:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003473045::NZ_QRLD01000004.1::G00040
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span96883-98927Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDW153_05710RefSeq proteinWP_118315617.1
Context group ID
GCF_003473045::NZ_QRLD01000004.1::G00040Context members
DW153_RS05705DW153_RS05710
Partner locus tags
DW153_RS05705DW153_RS05710
Partner old locus tags
DW153_05705DW153_05710
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_118315617.1Primary protein accession used for annex mappings.
UniProt accessionA0AAJ1B724Primary UniProt accession resolved in the annex database.
UniProt IDA0AAJ1B724_MEDGNDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDW153_RS05710Primary locus identifier stored in the genes table.
Old locus tagDW153_05710Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QRLD01000004.1Sequence record reported by the local genomic context database.
Genomic interval97 554-98 927 nt1 374 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span96 883-98 927 ntGCF_003473045::NZ_QRLD01000004.1::G00040
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003473045::NZ_QRLD01000004.1::G00040Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QRLD01000004.1All displayed genes belong to this local TCS context.
Neighborhood span96 883-98 927 nt2 045 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
96 883 nt98 927 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DW153_RS05705GCF_003473045#DW153_RS05705
RROmpR
96 883-97 557 nt · Forward (+)
DW153_RS05710GCF_003473045#DW153_RS05710
HKClassicCurrent focus
97 554-98 927 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003473045#DW153_RS05710The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1877242
Simplified PFAM architecture for HKOC_1877242
PFAM domain coverage: 235 / 457 aa (51.4%)
1 aa457 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[171-227] | HisKA[232-297] | HATPase_c[343-454]
- Domain count: 3
- Matched identifier: HKOC_1877242
- Positioned domains: HAMP 171-227 ; HisKA 232-297 ; HATPase_c 343-454
Cluster members and taxonomy
Representative gene: GCF_003473045#DW153_RS05710
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 33 038 · GCF_003473045
AssemblyASM347304v1 · Scaffoldhaploid
Genome composition3 323 923 bp · 42,5% GCMediterraneibacter gnavus
Signal transduction countsGenes 84 · HK 41 · RR 42CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key