1 Response_reg#1
4-108 aa · 105 aa · 44.9% of protein
Raw token
Response_reg:4:2.85e-22:108:108:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DW153_RS02475
Response regulator LytTR family
Mediterraneibacter gnavus · GCF_003473045
ClassRRTypeLytTRLength234 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_003473045#DW153_RS02475Stable P2CS identifier used across views.
GenomeGCF_003473045Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length234 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage197 / 234 aa (84.2%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa234 aa
Domain-by-domain annotation2 items
2 LytTR#2
136-227 aa · 92 aa · 39.3% of protein
Raw token
LytTR:136:2.8e-18:227:98:98- Raw architecture: Response_reg:4:2.85e-22:108:108:111#LytTR:136:2.8e-18:227:98:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_003473045::NZ_QRLD01000002.1::G00023
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span84024-84728Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDW153_02475RefSeq proteinWP_004844433.1
Context group ID
GCF_003473045::NZ_QRLD01000002.1::G00023Context members
DW153_RS02475
Partner locus tags
DW153_RS02475
Partner old locus tags
DW153_02475
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_004844433.1Primary protein accession used for annex mappings.
UniProt accessionA7B792Primary UniProt accession resolved in the annex database.
UniProt IDA7B792_MEDG7Display identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDW153_RS02475Primary locus identifier stored in the genes table.
Old locus tagDW153_02475Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QRLD01000002.1Sequence record reported by the local genomic context database.
Genomic interval84 024-84 728 nt705 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span84 024-84 728 ntGCF_003473045::NZ_QRLD01000002.1::G00023
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003473045::NZ_QRLD01000002.1::G00023Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QRLD01000002.1All displayed genes belong to this local TCS context.
Neighborhood span84 024-84 728 nt705 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
84 024 nt84 728 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
DW153_RS02475GCF_003473045#DW153_RS02475
RRLytTRCurrent focus
84 024-84 728 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000169475#RUMGNA_RS15160Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1047555
Simplified PFAM architecture for RROC_1047555
PFAM domain coverage: 195 / 234 aa (83.3%)
1 aa234 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[4-108] | LytTR[137-226]
- Domain count: 2
- Matched identifier: RROC_1047555
- Positioned domains: Response_reg 4-108 ; Response_reg 4-108 ; LytTR 137-226 ; LytTR 137-226
Cluster members and taxonomy
Representative gene: GCF_000169475#RUMGNA_RS15160
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 33 038 · GCF_003473045
AssemblyASM347304v1 · Scaffoldhaploid
Genome composition3 323 923 bp · 42,5% GCMediterraneibacter gnavus
Signal transduction countsGenes 84 · HK 41 · RR 42CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key