1 Response_reg#1
4-121 aa · 118 aa · 65.6% of protein
Raw token
Response_reg:4:1.08e-28:121:118:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DW118_RS10235
Response regulator, CheY family
Bifidobacterium longum · GCF_003472605
ClassRRTypeCheYLength180 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_003472605#DW118_RS10235Stable P2CS identifier used across views.
GenomeGCF_003472605Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length180 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage118 / 180 aa (65.6%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa180 aa
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:4:1.08e-28:121:118:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_003472605::NZ_QRMG01000026.1::G00007
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span1-540Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDW118_10240RefSeq proteinWP_147395786.1
Context group ID
GCF_003472605::NZ_QRMG01000026.1::G00007Context members
DW118_RS10235
Partner locus tags
DW118_RS10235
Partner old locus tags
DW118_10240
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_147395786.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDW118_RS10235Primary locus identifier stored in the genes table.
Old locus tagDW118_10240Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QRMG01000026.1Sequence record reported by the local genomic context database.
Genomic interval1-540 nt540 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span1-540 ntGCF_003472605::NZ_QRMG01000026.1::G00007
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003472605::NZ_QRMG01000026.1::G00007Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QRMG01000026.1All displayed genes belong to this local TCS context.
Neighborhood span1-540 nt540 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 nt540 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
DW118_RS10235GCF_003472605#DW118_RS10235
RRCheYCurrent focus
1-540 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003472605#DW118_RS10235The current gene is the representative for this cluster.
PFAM architectureResponse_reg1 domain in the representative PFAM annotation.
PFAM architecture for RROC_2186311
Simplified PFAM architecture for RROC_2186311
PFAM domain coverage: 118 / 180 aa (65.6%)
1 aa180 aa
Response_reg
- Simplified architecture: Response_reg
- Raw architecture: Response_reg[4-121]
- Domain count: 1
- Matched identifier: RROC_2186311
- Positioned domains: Response_reg 4-121 ; Response_reg 4-121
Cluster members and taxonomy
Representative gene: GCF_003472605#DW118_RS10235
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 216 816 · GCF_003472605
AssemblyASM347260v1 · Scaffoldhaploid
Genome composition2 414 114 bp · 60,0% GCBifidobacterium longum
Signal transduction countsGenes 23 · HK 10 · RR 11CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key