Gene detail

DW119_RS01010

Histidine kinase, Classic

Bifidobacterium pseudocatenulatum · GCF_003472575

Open genome Open selected cluster RefSeq

ClassHKTypeClassicLength449 aaTM0ValidatedNoCompleteYesContextpaired

Gene IDGCF_003472575#DW119_RS01010Stable P2CS identifier used across views.

GenomeGCF_003472575Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium

Selected clusterHKOC_1977132Run 6 · 11 sequences · id 100% · cov 80%

External referencesWP_117649423.1 · MIST4 DW119_RS01010RefSeq · MIST4

Domain signature

Compact overview inferred from the domain field

HisKA_3HATPase_c

Protein length449 aaLength used to scale native and Biotite-like views.

Annotated domains22 with usable coordinates.

Domain coverage175 / 449 aa (39.0%)Merged over positioned domains only.

Domain description1 HisKA_3,1 HATPase_cSummary string stored in the genes table.

Signal peptideUnavailableNo TMPRED prediction file matched this gene.

Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.

Complete domain annotations

Domain view

Native Biotite-like

Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.

1 aa449 aa

Domain-by-domain annotation2 items

1 HisKA_3#1

216-280 aa · 65 aa · 14.5% of protein

Raw tokenHisKA_3:216:0.0000000000000023:280:65:68

2 HATPase_c#2

326-435 aa · 110 aa · 24.5% of protein

Raw tokenHATPase_c:326:0.0000000322:435:112:109

Raw architecture: HisKA_3:216:0.0000000000000023:280:65:68#HATPase_c:326:0.0000000322:435:112:109
Domain description: 1 HisKA_3,1 HATPase_c
TM description: N/A
TMPRED source: No TMPRED file loaded
TMPRED segments: N/A
Complete: Yes

Context mapping

Resolved via p2cs_tcs_context.db when a locus tag match exists

Context labelpairedGCF_003472575::NZ_QRMF01000001.1::G00002

Group size22 locus tags listed below.

HK / RR1 / 1Counts resolved for the local TCS neighborhood.

Context span257279-259287Genomic interval covered by the local TCS group.

Identifiers

Old locus tagDW119_01010RefSeq proteinWP_117649423.1

Context group IDGCF_003472575::NZ_QRMF01000001.1::G00002

Context members

DW119_RS01010DW119_RS01015

Partner locus tags

DW119_RS01010DW119_RS01015

Partner old locus tags

DW119_01010DW119_01015

Partner protein IDs

WP_117649423.1 WP_033524130.1

External references

Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table

No UniProt / GO / PubMed mapping was found for WP_117649423.1.

Genomic coordinates

Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table

Current locus tagDW119_RS01010Primary locus identifier stored in the genes table.

Old locus tagDW119_01010Legacy locus tag recovered from the local context mapping.

Contig / repliconNZ_QRMF01000001.1Sequence record reported by the local genomic context database.

Genomic interval257 279-258 628 nt1 350 nt · Forward (+)

StrandForward (+)Strand sign follows the local context database convention.

Local TCS group span257 279-259 287 ntGCF_003472575::NZ_QRMF01000001.1::G00002

Quick actions

Open genome Search genes in genome

Local neighborhood

Graphical neighborhood resolved from the local TCS context group on the current contig

GCF_003472575::NZ_QRMF01000001.1::G00002

Graphic view

Compact Biotite-like

Zoom

Full window Focus gene

Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.

Context labelpairedNeighborhood members are ordered by genomic coordinates.

Contig / repliconNZ_QRMF01000001.1All displayed genes belong to this local TCS context.

Neighborhood span257 279-259 287 nt2 009 nt

Members21 current focus gene

Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.

257 279 nt259 287 nt

+-DW119_RS01010 DW119_RS01015

Neighborhood gene cards

2 genes in the current local neighborhood.

DW119_RS01010GCF_003472575#DW119_RS01010

HKClassicCurrent focus

257 279-258 628 nt · Forward (+)

Old locus DW119_01010RefSeq WP_117649423.1

Open current gene

DW119_RS01015GCF_003472575#DW119_RS01015

RRNarL

258 628-259 287 nt · Forward (+)

Old locus DW119_01015RefSeq WP_033524130.1

Open gene

Clusters

CD-HIT memberships and selected cluster details for the current gene class

Available memberships1 cluster

HKOC_1977132HK

Run 611 sequencesid 100%cov 80%

PFAM HisKA_3

Representative GCF_003436545#DXD35_RS03280

Selected clusterHKOC_1977132Run 6 · HK · 11 sequences

Representative sequenceGCF_003436545#DXD35_RS03280Use this link to inspect the representative gene detail.

PFAM architectureHisKA_31 domain in the representative PFAM annotation.

Open in cluster search Open representative gene

PFAM architecture for HKOC_1977132

Simplified PFAM architecture for HKOC_1977132

PFAM domain coverage: 66 / 449 aa (14.7%)

1 aa449 aa

HisKA_3

Simplified architecture: HisKA_3
Raw architecture: HisKA_3[216-281]
Domain count: 1
Matched identifier: HKOC_1977132
Positioned domains: HisKA_3 216-281

Cluster members and taxonomy

Representative gene: GCF_003436545#DXD35_RS03280

Sankey plot built from the taxonomy of all members in the selected cluster.

Genome taxonomy

Unknown

Taxonomy recordUnknownTaxon ID 28 026 · GCF_003472575

AssemblyASM347257v1 · Scaffoldhaploid

Genome composition2 142 870 bp · 56,5% GCBifidobacterium pseudocatenulatum

Signal transduction countsGenes 28 · HK 11 · RR 15CheA 0 · PP 2

Ranked taxonomy7 ranked levels available

SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium

Lineage path7 lineage nodes

1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium

Open genome Search genes in genome Search HK genes NCBI assembly files

Related genes

Preview from the same derived genome key