1 Response_reg#1
4-113 aa · 110 aa · 47.0% of protein
Raw token
Response_reg:4:1.9e-37:113:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DW122_RS01065
Response regulator OmpR family
Bifidobacterium pseudocatenulatum · GCF_003472545
ClassRRTypeOmpRLength234 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003472545#DW122_RS01065Stable P2CS identifier used across views.
GenomeGCF_003472545Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length234 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage187 / 234 aa (79.9%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 Trans_reg_C#2
153-229 aa · 77 aa · 32.9% of protein
Raw token
Trans_reg_C:153:3.85e-33:229:77:77- Raw architecture: Response_reg:4:1.9e-37:113:111:111#Trans_reg_C:153:3.85e-33:229:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003472545::NZ_QRMD01000001.1::G00003
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span223686-225847Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDW122_01065RefSeq proteinWP_065441445.1
Context group ID
GCF_003472545::NZ_QRMD01000001.1::G00003Context members
DW122_RS01065DW122_RS01070
Partner locus tags
DW122_RS01065DW122_RS01070
Partner old locus tags
DW122_01065DW122_01070
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_065441445.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDW122_RS01065Primary locus identifier stored in the genes table.
Old locus tagDW122_01065Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QRMD01000001.1Sequence record reported by the local genomic context database.
Genomic interval223 686-224 390 nt705 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span223 686-225 847 ntGCF_003472545::NZ_QRMD01000001.1::G00003
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003472545::NZ_QRMD01000001.1::G00003Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QRMD01000001.1All displayed genes belong to this local TCS context.
Neighborhood span223 686-225 847 nt2 162 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
223 686 nt225 847 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DW122_RS01065GCF_003472545#DW122_RS01065
RROmpRCurrent focus
223 686-224 390 nt · Reverse (-)
DW122_RS01070GCF_003472545#DW122_RS01070
HKClassic
224 462-225 847 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001685985#BAD09_RS06145Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1052210
Simplified PFAM architecture for RROC_1052210
PFAM domain coverage: 184 / 234 aa (78.6%)
1 aa234 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-113] | Trans_reg_C[155-228]
- Domain count: 2
- Matched identifier: RROC_1052210
- Positioned domains: Response_reg 4-113 ; Response_reg 4-113 ; Trans_reg_C 155-228 ; Trans_reg_C 155-228
Cluster members and taxonomy
Representative gene: GCF_001685985#BAD09_RS06145
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 28 026 · GCF_003472545
AssemblyASM347254v1 · Scaffoldhaploid
Genome composition2 142 379 bp · 56,5% GCBifidobacterium pseudocatenulatum
Signal transduction countsGenes 28 · HK 11 · RR 15CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key