1 Response_reg#1
7-110 aa · 104 aa · 47.7% of protein
Raw token
Response_reg:7:0.0000000000000102:110:104:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DW144_RS04345
Response regulator NarL family
Bifidobacterium adolescentis · GCF_003472245
ClassRRTypeNarLLength218 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_003472245#DW144_RS04345Stable P2CS identifier used across views.
GenomeGCF_003472245Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length218 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage159 / 218 aa (72.9%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa218 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
155-209 aa · 55 aa · 25.2% of protein
Raw token
HTH_LUXR:155:2.59e-16:209:55:58- Raw architecture: Response_reg:7:0.0000000000000102:110:104:111#HTH_LUXR:155:2.59e-16:209:55:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_003472245::NZ_QRLL01000003.1::G00013
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span73136-73792Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDW144_04345RefSeq proteinWP_118278252.1
Context group ID
GCF_003472245::NZ_QRLL01000003.1::G00013Context members
DW144_RS04345
Partner locus tags
DW144_RS04345
Partner old locus tags
DW144_04345
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_118278252.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDW144_RS04345Primary locus identifier stored in the genes table.
Old locus tagDW144_04345Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QRLL01000003.1Sequence record reported by the local genomic context database.
Genomic interval73 136-73 792 nt657 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span73 136-73 792 ntGCF_003472245::NZ_QRLL01000003.1::G00013
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003472245::NZ_QRLL01000003.1::G00013Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QRLL01000003.1All displayed genes belong to this local TCS context.
Neighborhood span73 136-73 792 nt657 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
73 136 nt73 792 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
DW144_RS04345GCF_003472245#DW144_RS04345
RRNarLCurrent focus
73 136-73 792 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003472245#DW144_RS04345The current gene is the representative for this cluster.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1819881
Simplified PFAM architecture for RROC_1819881
PFAM domain coverage: 166 / 218 aa (76.1%)
1 aa218 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[7-119] | GerE[157-209]
- Domain count: 2
- Matched identifier: RROC_1819881
- Positioned domains: Response_reg 7-119 ; Response_reg 7-119 ; GerE 157-209 ; GerE 157-209
Cluster members and taxonomy
Representative gene: GCF_003472245#DW144_RS04345
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 680 · GCF_003472245
AssemblyASM347224v1 · Scaffoldhaploid
Genome composition2 288 825 bp · 59,0% GCBifidobacterium adolescentis
Signal transduction countsGenes 24 · HK 11 · RR 13CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key