1 Response_reg#1
4-87 aa · 84 aa · 35.9% of protein
Raw token
Response_reg:4:1.58e-16:87:86:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DW164_RS02075
Response regulator LytTR family
Bifidobacterium adolescentis · GCF_003472095
ClassRRTypeLytTRLength234 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_003472095#DW164_RS02075Stable P2CS identifier used across views.
GenomeGCF_003472095Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length234 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage158 / 234 aa (67.5%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa234 aa
Domain-by-domain annotation2 items
2 LytTR#2
139-212 aa · 74 aa · 31.6% of protein
Raw token
LytTR:139:0.00000112:212:79:98- Raw architecture: Response_reg:4:1.58e-16:87:86:111#LytTR:139:0.00000112:212:79:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_003472095::NZ_QRKU01000001.1::G00004
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span499207-499911Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDW164_02075RefSeq proteinWP_118234908.1
Context group ID
GCF_003472095::NZ_QRKU01000001.1::G00004Context members
DW164_RS02075
Partner locus tags
DW164_RS02075
Partner old locus tags
DW164_02075
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_118234908.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDW164_RS02075Primary locus identifier stored in the genes table.
Old locus tagDW164_02075Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QRKU01000001.1Sequence record reported by the local genomic context database.
Genomic interval499 207-499 911 nt705 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span499 207-499 911 ntGCF_003472095::NZ_QRKU01000001.1::G00004
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003472095::NZ_QRKU01000001.1::G00004Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QRKU01000001.1All displayed genes belong to this local TCS context.
Neighborhood span499 207-499 911 nt705 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
499 207 nt499 911 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
DW164_RS02075GCF_003472095#DW164_RS02075
RRLytTRCurrent focus
499 207-499 911 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000154085#BIFADO_RS03530Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0611959
Simplified PFAM architecture for RROC_0611959
PFAM domain coverage: 203 / 271 aa (74.9%)
1 aa271 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[4-129] | LytTR[176-252]
- Domain count: 2
- Matched identifier: RROC_0611959
- Positioned domains: Response_reg 4-129 ; Response_reg 4-129 ; LytTR 176-252 ; LytTR 176-252
Cluster members and taxonomy
Representative gene: GCF_000154085#BIFADO_RS03530
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 680 · GCF_003472095
AssemblyASM347209v1 · Scaffoldhaploid
Genome composition2 193 162 bp · 59,0% GCBifidobacterium adolescentis
Signal transduction countsGenes 25 · HK 11 · RR 13CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key