1 Response_reg#1
6-115 aa · 110 aa · 47.0% of protein
Raw token
Response_reg:6:9.68e-39:115:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DW207_RS08325
Response regulator OmpR family
Mediterraneibacter gnavus · GCF_003471625
ClassRRTypeOmpRLength234 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003471625#DW207_RS08325Stable P2CS identifier used across views.
GenomeGCF_003471625Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length234 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage187 / 234 aa (79.9%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa234 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
153-229 aa · 77 aa · 32.9% of protein
Raw token
Trans_reg_C:153:8.65e-25:229:77:77- Raw architecture: Response_reg:6:9.68e-39:115:111:111#Trans_reg_C:153:8.65e-25:229:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003471625::NZ_QRJQ01000009.1::G00044
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span66468-68709Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDW207_08330RefSeq proteinWP_118227501.1
Context group ID
GCF_003471625::NZ_QRJQ01000009.1::G00044Context members
DW207_RS08325DW207_RS08330
Partner locus tags
DW207_RS08325DW207_RS08330
Partner old locus tags
DW207_08330DW207_08335
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_118227501.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDW207_RS08325Primary locus identifier stored in the genes table.
Old locus tagDW207_08330Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QRJQ01000009.1Sequence record reported by the local genomic context database.
Genomic interval66 468-67 172 nt705 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span66 468-68 709 ntGCF_003471625::NZ_QRJQ01000009.1::G00044
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003471625::NZ_QRJQ01000009.1::G00044Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QRJQ01000009.1All displayed genes belong to this local TCS context.
Neighborhood span66 468-68 709 nt2 242 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
66 468 nt68 709 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DW207_RS08325GCF_003471625#DW207_RS08325
RROmpRCurrent focus
66 468-67 172 nt · Reverse (-)
DW207_RS08330GCF_003471625#DW207_RS08330
HKClassic
67 165-68 709 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003471625#DW207_RS08325The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1055581
Simplified PFAM architecture for RROC_1055581
PFAM domain coverage: 186 / 234 aa (79.5%)
1 aa234 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[6-114] | Trans_reg_C[153-229]
- Domain count: 2
- Matched identifier: RROC_1055581
- Positioned domains: Response_reg 6-114 ; Response_reg 6-114 ; Trans_reg_C 153-229 ; Trans_reg_C 153-229
Cluster members and taxonomy
Representative gene: GCF_003471625#DW207_RS08325
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 33 038 · GCF_003471625
AssemblyASM347162v1 · Scaffoldhaploid
Genome composition3 388 519 bp · 43,0% GCMediterraneibacter gnavus
Signal transduction countsGenes 78 · HK 37 · RR 40CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key