1 HisKA#1
90-145 aa · 56 aa · 17.9% of protein
Raw token
HisKA:90:0.00000000000000687:145:56:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DW207_RS04355
Histidine kinase, Classic
Mediterraneibacter gnavus · GCF_003471625
ClassHKTypeClassicLength312 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_003471625#DW207_RS04355Stable P2CS identifier used across views.
GenomeGCF_003471625Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length312 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage171 / 312 aa (54.8%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa312 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
192-306 aa · 115 aa · 36.9% of protein
Raw token
HATPase_c:192:3.99e-18:306:116:109- Raw architecture: HisKA:90:0.00000000000000687:145:56:64#HATPase_c:192:3.99e-18:306:116:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_003471625::NZ_QRJQ01000004.1::G00032
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span20901-21839Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDW207_04360RefSeq proteinWP_118227437.1
Context group ID
GCF_003471625::NZ_QRJQ01000004.1::G00032Context members
DW207_RS04355
Partner locus tags
DW207_RS04355
Partner old locus tags
DW207_04360
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_118227437.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDW207_RS04355Primary locus identifier stored in the genes table.
Old locus tagDW207_04360Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QRJQ01000004.1Sequence record reported by the local genomic context database.
Genomic interval20 901-21 839 nt939 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span20 901-21 839 ntGCF_003471625::NZ_QRJQ01000004.1::G00032
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003471625::NZ_QRJQ01000004.1::G00032Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QRJQ01000004.1All displayed genes belong to this local TCS context.
Neighborhood span20 901-21 839 nt939 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
20 901 nt21 839 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
DW207_RS04355GCF_003471625#DW207_RS04355
HKClassicCurrent focus
20 901-21 839 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003471625#DW207_RS04355The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2875929
Simplified PFAM architecture for HKOC_2875929
PFAM domain coverage: 171 / 312 aa (54.8%)
1 aa312 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[88-145] | HATPase_c[192-304]
- Domain count: 2
- Matched identifier: HKOC_2875929
- Positioned domains: HisKA 88-145 ; HATPase_c 192-304
Cluster members and taxonomy
Representative gene: GCF_003471625#DW207_RS04355
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 33 038 · GCF_003471625
AssemblyASM347162v1 · Scaffoldhaploid
Genome composition3 388 519 bp · 43,0% GCMediterraneibacter gnavus
Signal transduction countsGenes 78 · HK 37 · RR 40CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key