1 Response_reg#1
9-133 aa · 125 aa · 50.4% of protein
Raw token
Response_reg:9:1.36e-28:133:125:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DW224_RS04395
Response regulator NarL family
Bifidobacterium pseudocatenulatum · GCF_003471505
ClassRRTypeNarLLength248 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003471505#DW224_RS04395Stable P2CS identifier used across views.
GenomeGCF_003471505Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length248 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage183 / 248 aa (73.8%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa248 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
185-242 aa · 58 aa · 23.4% of protein
Raw token
HTH_LUXR:185:3.92e-23:242:58:58- Raw architecture: Response_reg:9:1.36e-28:133:125:111#HTH_LUXR:185:3.92e-23:242:58:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003471505::NZ_QRJG01000001.1::G00008
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span1057647-1061079Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDW224_04390RefSeq proteinWP_118269865.1
Context group ID
GCF_003471505::NZ_QRJG01000001.1::G00008Context members
DW224_RS04390DW224_RS04395
Partner locus tags
DW224_RS04390DW224_RS04395
Partner old locus tags
DW224_04385DW224_04390
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_118269865.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDW224_RS04395Primary locus identifier stored in the genes table.
Old locus tagDW224_04390Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QRJG01000001.1Sequence record reported by the local genomic context database.
Genomic interval1 060 333-1 061 079 nt747 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span1 057 647-1 061 079 ntGCF_003471505::NZ_QRJG01000001.1::G00008
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003471505::NZ_QRJG01000001.1::G00008Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QRJG01000001.1All displayed genes belong to this local TCS context.
Neighborhood span1 057 647-1 061 079 nt3 433 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 057 647 nt1 061 079 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DW224_RS04390GCF_003471505#DW224_RS04390
HKClassic
1 057 647-1 060 256 nt · Forward (+)
DW224_RS04395GCF_003471505#DW224_RS04395
RRNarLCurrent focus
1 060 333-1 061 079 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003471505#DW224_RS04395The current gene is the representative for this cluster.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0746270
Simplified PFAM architecture for RROC_0746270
PFAM domain coverage: 180 / 248 aa (72.6%)
1 aa248 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[9-132] | GerE[187-242]
- Domain count: 2
- Matched identifier: RROC_0746270
- Positioned domains: Response_reg 9-132 ; Response_reg 9-132 ; GerE 187-242 ; GerE 187-242
Cluster members and taxonomy
Representative gene: GCF_003471505#DW224_RS04395
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 28 026 · GCF_003471505
AssemblyASM347150v1 · Scaffoldhaploid
Genome composition2 225 059 bp · 56,0% GCBifidobacterium pseudocatenulatum
Signal transduction countsGenes 28 · HK 11 · RR 15CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key