1 Response_reg#1
11-124 aa · 114 aa · 49.4% of protein
Raw token
Response_reg:11:0.00000000000000599:124:114:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DW237_RS01365
Response regulator NarL family
Bifidobacterium longum · GCF_003471355
ClassRRTypeNarLLength231 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_003471355#DW237_RS01365Stable P2CS identifier used across views.
GenomeGCF_003471355Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length231 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage172 / 231 aa (74.5%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 HTH_LUXR#2
168-225 aa · 58 aa · 25.1% of protein
Raw token
HTH_LUXR:168:2.29e-26:225:58:58- Raw architecture: Response_reg:11:0.00000000000000599:124:114:111#HTH_LUXR:168:2.29e-26:225:58:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_003471355::NZ_QRIW01000001.1::G00002
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span306482-307177Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDW237_01365RefSeq proteinWP_118214036.1
Context group ID
GCF_003471355::NZ_QRIW01000001.1::G00002Context members
DW237_RS01365
Partner locus tags
DW237_RS01365
Partner old locus tags
DW237_01365
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_118214036.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDW237_RS01365Primary locus identifier stored in the genes table.
Old locus tagDW237_01365Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QRIW01000001.1Sequence record reported by the local genomic context database.
Genomic interval306 482-307 177 nt696 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span306 482-307 177 ntGCF_003471355::NZ_QRIW01000001.1::G00002
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003471355::NZ_QRIW01000001.1::G00002Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QRIW01000001.1All displayed genes belong to this local TCS context.
Neighborhood span306 482-307 177 nt696 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
306 482 nt307 177 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
DW237_RS01365GCF_003471355#DW237_RS01365
RRNarLCurrent focus
306 482-307 177 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003471345#DW235_RS00920Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1168263
Simplified PFAM architecture for RROC_1168263
PFAM domain coverage: 169 / 231 aa (73.2%)
1 aa231 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[11-123] | GerE[170-225]
- Domain count: 2
- Matched identifier: RROC_1168263
- Positioned domains: Response_reg 11-123 ; Response_reg 11-123 ; GerE 170-225 ; GerE 170-225
Cluster members and taxonomy
Representative gene: GCF_003471345#DW235_RS00920
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 216 816 · GCF_003471355
AssemblyASM347135v1 · Scaffoldhaploid
Genome composition2 296 533 bp · 60,0% GCBifidobacterium longum
Signal transduction countsGenes 21 · HK 9 · RR 11CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key