1 HAMP#1
267-335 aa · 69 aa · 10.4% of protein
Raw token
HAMP:267:0.00000000000000112:335:69:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DW235_RS08920
Histidine kinase, Classic
Bifidobacterium longum · GCF_003471345
ClassHKTypeClassicLength663 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003471345#DW235_RS08920Stable P2CS identifier used across views.
GenomeGCF_003471345Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length663 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage287 / 663 aa (43.3%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation3 items
2 HisKA#2
347-416 aa · 70 aa · 10.6% of protein
Raw token
HisKA:347:5.83e-18:416:70:643 HATPase_c#3
480-627 aa · 148 aa · 22.3% of protein
Raw token
HATPase_c:480:4.09e-21:627:148:109- Raw architecture: HAMP:267:0.00000000000000112:335:69:69#HisKA:347:5.83e-18:416:70:64#HATPase_c:480:4.09e-21:627:148:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003471345::NZ_QRIY01000014.1::G00002
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span18408-21161Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDW235_08925RefSeq proteinWP_013410836.1
Context group ID
GCF_003471345::NZ_QRIY01000014.1::G00002Context members
DW235_RS08920DW235_RS08925
Partner locus tags
DW235_RS08920DW235_RS08925
Partner old locus tags
DW235_08925DW235_08930
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_013410836.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDW235_RS08920Primary locus identifier stored in the genes table.
Old locus tagDW235_08925Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QRIY01000014.1Sequence record reported by the local genomic context database.
Genomic interval18 408-20 399 nt1 992 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span18 408-21 161 ntGCF_003471345::NZ_QRIY01000014.1::G00002
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003471345::NZ_QRIY01000014.1::G00002Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QRIY01000014.1All displayed genes belong to this local TCS context.
Neighborhood span18 408-21 161 nt2 754 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
18 408 nt21 161 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DW235_RS08920GCF_003471345#DW235_RS08920
HKClassicCurrent focus
18 408-20 399 nt · Reverse (-)
DW235_RS08925GCF_003471345#DW235_RS08925
RROmpR
20 430-21 161 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000166315#BBMN68_RS00240Use this link to inspect the representative gene detail.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0864184
Simplified PFAM architecture for HKOC_0864184
PFAM domain coverage: 268 / 663 aa (40.4%)
1 aa663 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[284-335] | HisKA[348-416] | HATPase_c[480-626]
- Domain count: 3
- Matched identifier: HKOC_0864184
- Positioned domains: HAMP 284-335 ; HisKA 348-416 ; HATPase_c 480-626
Cluster members and taxonomy
Representative gene: GCF_000166315#BBMN68_RS00240
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 216 816 · GCF_003471345
AssemblyASM347134v1 · Scaffoldhaploid
Genome composition2 298 098 bp · 60,0% GCBifidobacterium longum
Signal transduction countsGenes 22 · HK 9 · RR 11CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key