1 HisKA_3#1
242-304 aa · 63 aa · 7.2% of protein
Raw token
HisKA_3:242:3.65e-18:304:63:68P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DW239_RS06750
Histidine kinase, Classic
Bifidobacterium pseudocatenulatum · GCF_003471295
ClassHKTypeClassicLength871 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003471295#DW239_RS06750Stable P2CS identifier used across views.
GenomeGCF_003471295Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
HisKA_3HATPase_c
Protein length871 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage150 / 871 aa (17.2%)Merged over positioned domains only.
Domain description1 HisKA_3,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa871 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
353-439 aa · 87 aa · 10.0% of protein
Raw token
HATPase_c:353:0.000000000000558:439:104:109- Raw architecture: HisKA_3:242:3.65e-18:304:63:68#HATPase_c:353:0.000000000000558:439:104:109
- Domain description: 1 HisKA_3,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003471295::NZ_QRIU01000005.1::G00013
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span186098-189536Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDW239_06760RefSeq proteinWP_182338124.1
Context group ID
GCF_003471295::NZ_QRIU01000005.1::G00013Context members
DW239_RS06745DW239_RS06750
Partner locus tags
DW239_RS06745DW239_RS06750
Partner old locus tags
DW239_06755DW239_06760
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_182338124.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDW239_RS06750Primary locus identifier stored in the genes table.
Old locus tagDW239_06760Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QRIU01000005.1Sequence record reported by the local genomic context database.
Genomic interval186 921-189 536 nt2 616 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span186 098-189 536 ntGCF_003471295::NZ_QRIU01000005.1::G00013
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003471295::NZ_QRIU01000005.1::G00013Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QRIU01000005.1All displayed genes belong to this local TCS context.
Neighborhood span186 098-189 536 nt3 439 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
186 098 nt189 536 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DW239_RS06745GCF_003471295#DW239_RS06745
RRNarL
186 098-186 844 nt · Reverse (-)
DW239_RS06750GCF_003471295#DW239_RS06750
HKClassicCurrent focus
186 921-189 536 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003471295#DW239_RS06750The current gene is the representative for this cluster.
PFAM architectureDUF7134 + HisKA_3 + HATPase_c + DUF71344 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0457440
Simplified PFAM architecture for HKOC_0457440
PFAM domain coverage: 429 / 871 aa (49.3%)
1 aa871 aa
DUF7134HisKA_3HATPase_cDUF7134
- Simplified architecture: DUF7134 + HisKA_3 + HATPase_c + DUF7134
- Raw architecture: DUF7134[10-147] | HisKA_3[242-304] | HATPase_c[353-440] | DUF7134[554-693]
- Domain count: 4
- Matched identifier: HKOC_0457440
- Positioned domains: DUF7134 10-147 ; HisKA_3 242-304 ; HATPase_c 353-440 ; DUF7134 554-693
Cluster members and taxonomy
Representative gene: GCF_003471295#DW239_RS06750
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 28 026 · GCF_003471295
AssemblyASM347129v1 · Scaffoldhaploid
Genome composition2 159 427 bp · 56,5% GCBifidobacterium pseudocatenulatum
Signal transduction countsGenes 25 · HK 10 · RR 13CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key