1 Response_reg#1
5-109 aa · 105 aa · 48.4% of protein
Raw token
Response_reg:5:1.03e-26:109:107:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DW243_RS09010
Response regulator OmpR family
Mediterraneibacter gnavus · GCF_003471265
ClassRRTypeOmpRLength217 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003471265#DW243_RS09010Stable P2CS identifier used across views.
GenomeGCF_003471265Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length217 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage179 / 217 aa (82.5%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa217 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
142-215 aa · 74 aa · 34.1% of protein
Raw token
Trans_reg_C:142:1.16e-25:215:77:77- Raw architecture: Response_reg:5:1.03e-26:109:107:111#Trans_reg_C:142:1.16e-25:215:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003471265::NZ_QRIS01000013.1::G00011
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span39848-41423Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDW243_09005RefSeq proteinWP_118005567.1
Context group ID
GCF_003471265::NZ_QRIS01000013.1::G00011Context members
DW243_RS09010DW243_RS09015
Partner locus tags
DW243_RS09010DW243_RS09015
Partner old locus tags
DW243_09005DW243_09010
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_118005567.1Primary protein accession used for annex mappings.
UniProt accessionA0A414D3R2Primary UniProt accession resolved in the annex database.
UniProt IDA0A414D3R2_MEDGNDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDW243_RS09010Primary locus identifier stored in the genes table.
Old locus tagDW243_09005Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QRIS01000013.1Sequence record reported by the local genomic context database.
Genomic interval39 848-40 501 nt654 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span39 848-41 423 ntGCF_003471265::NZ_QRIS01000013.1::G00011
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003471265::NZ_QRIS01000013.1::G00011Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QRIS01000013.1All displayed genes belong to this local TCS context.
Neighborhood span39 848-41 423 nt1 576 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
39 848 nt41 423 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DW243_RS09010GCF_003471265#DW243_RS09010
RROmpRCurrent focus
39 848-40 501 nt · Forward (+)
DW243_RS09015GCF_003471265#DW243_RS09015
HKClassic
40 503-41 423 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003459125#DWY23_RS02395Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1854346
Simplified PFAM architecture for RROC_1854346
PFAM domain coverage: 181 / 217 aa (83.4%)
1 aa217 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-110] | Trans_reg_C[142-215]
- Domain count: 2
- Matched identifier: RROC_1854346
- Positioned domains: Response_reg 4-110 ; Response_reg 4-110 ; Trans_reg_C 142-215 ; Trans_reg_C 142-215
Cluster members and taxonomy
Representative gene: GCF_003459125#DWY23_RS02395
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 33 038 · GCF_003471265
AssemblyASM347126v1 · Scaffoldhaploid
Genome composition3 908 902 bp · 42,0% GCMediterraneibacter gnavus
Signal transduction countsGenes 99 · HK 47 · RR 51CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key