1 Response_reg#1
4-113 aa · 110 aa · 21.5% of protein
Raw token
Response_reg:4:5.02e-30:113:110:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DW243_RS06185
Response regulator, unclassified
Mediterraneibacter gnavus · GCF_003471265
ClassRRTypeunclassifiedLength512 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003471265#DW243_RS06185Stable P2CS identifier used across views.
GenomeGCF_003471265Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length512 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage184 / 512 aa (35.9%)Merged over positioned domains only.
Domain description1 Response_reg,2 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa512 aa
Domain-by-domain annotation3 items
2 HTH_AraC#2
408-449 aa · 42 aa · 8.2% of protein
Raw token
HTH_AraC:408:0.0000000286:449:42:423 HTH_AraC#3
463-494 aa · 32 aa · 6.3% of protein
Raw token
HTH_AraC:463:0.000000164:494:32:42- Raw architecture: Response_reg:4:5.02e-30:113:110:111#HTH_AraC:408:0.0000000286:449:42:42#HTH_AraC:463:0.000000164:494:32:42
- Domain description: 1 Response_reg,2 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003471265::NZ_QRIS01000008.1::G00055
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span75659-78884Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDW243_06180RefSeq proteinWP_181974015.1
Context group ID
GCF_003471265::NZ_QRIS01000008.1::G00055Context members
DW243_RS06180DW243_RS06185
Partner locus tags
DW243_RS06180DW243_RS06185
Partner old locus tags
DW243_06175DW243_06180
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_181974015.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDW243_RS06185Primary locus identifier stored in the genes table.
Old locus tagDW243_06180Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QRIS01000008.1Sequence record reported by the local genomic context database.
Genomic interval77 346-78 884 nt1 539 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span75 659-78 884 ntGCF_003471265::NZ_QRIS01000008.1::G00055
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003471265::NZ_QRIS01000008.1::G00055Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QRIS01000008.1All displayed genes belong to this local TCS context.
Neighborhood span75 659-78 884 nt3 226 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
75 659 nt78 884 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DW243_RS06180GCF_003471265#DW243_RS06180
HKClassic
75 659-77 374 nt · Reverse (-)
DW243_RS06185GCF_003471265#DW243_RS06185
RRunclassifiedCurrent focus
77 346-78 884 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003436535#DXD36_RS08260Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + HTH_182 domains in the representative PFAM annotation.
PFAM architecture for RROC_0143509
Simplified PFAM architecture for RROC_0143509
PFAM domain coverage: 189 / 512 aa (36.9%)
1 aa512 aa
Response_regHTH_18
- Simplified architecture: Response_reg + HTH_18
- Raw architecture: Response_reg[4-113] | HTH_18[421-499]
- Domain count: 2
- Matched identifier: RROC_0143509
- Positioned domains: Response_reg 4-113 ; Response_reg 4-113 ; HTH_18 421-499 ; HTH_18 421-499
Cluster members and taxonomy
Representative gene: GCF_003436535#DXD36_RS08260
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 33 038 · GCF_003471265
AssemblyASM347126v1 · Scaffoldhaploid
Genome composition3 908 902 bp · 42,0% GCMediterraneibacter gnavus
Signal transduction countsGenes 99 · HK 47 · RR 51CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key