1 HAMP#1
160-229 aa · 70 aa · 14.8% of protein
Raw token
HAMP:160:0.000000000000227:229:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DW243_RS05615
Histidine kinase, Classic
Mediterraneibacter gnavus · GCF_003471265
ClassHKTypeClassicLength472 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003471265#DW243_RS05615Stable P2CS identifier used across views.
GenomeGCF_003471265Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length472 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage243 / 472 aa (51.5%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa472 aa
Domain-by-domain annotation3 items
2 HisKA#2
254-319 aa · 66 aa · 14.0% of protein
Raw token
HisKA:254:0.000000000958:319:66:643 HATPase_c#3
366-472 aa · 107 aa · 22.7% of protein
Raw token
HATPase_c:366:3.08e-18:472:108:109- Raw architecture: HAMP:160:0.000000000000227:229:70:69#HisKA:254:0.000000000958:319:66:64#HATPase_c:366:3.08e-18:472:108:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003471265::NZ_QRIS01000007.1::G00049
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span107310-109383Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDW243_05610RefSeq proteinWP_118207837.1
Context group ID
GCF_003471265::NZ_QRIS01000007.1::G00049Context members
DW243_RS05615DW243_RS05620
Partner locus tags
DW243_RS05615DW243_RS05620
Partner old locus tags
DW243_05610DW243_05615
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_118207837.1Primary protein accession used for annex mappings.
UniProt accessionA0A414UXI7Primary UniProt accession resolved in the annex database.
UniProt IDA0A414UXI7_MEDGNDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDW243_RS05615Primary locus identifier stored in the genes table.
Old locus tagDW243_05610Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QRIS01000007.1Sequence record reported by the local genomic context database.
Genomic interval107 310-108 728 nt1 419 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span107 310-109 383 ntGCF_003471265::NZ_QRIS01000007.1::G00049
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003471265::NZ_QRIS01000007.1::G00049Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QRIS01000007.1All displayed genes belong to this local TCS context.
Neighborhood span107 310-109 383 nt2 074 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
107 310 nt109 383 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DW243_RS05615GCF_003471265#DW243_RS05615
HKClassicCurrent focus
107 310-108 728 nt · Reverse (-)
DW243_RS05620GCF_003471265#DW243_RS05620
RROmpR
108 712-109 383 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003470485#DW248_RS04935Use this link to inspect the representative gene detail.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1699096
Simplified PFAM architecture for HKOC_1699096
PFAM domain coverage: 221 / 472 aa (46.8%)
1 aa472 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[178-228] | HisKA[255-319] | HATPase_c[366-470]
- Domain count: 3
- Matched identifier: HKOC_1699096
- Positioned domains: HAMP 178-228 ; HisKA 255-319 ; HATPase_c 366-470
Cluster members and taxonomy
Representative gene: GCF_003470485#DW248_RS04935
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 33 038 · GCF_003471265
AssemblyASM347126v1 · Scaffoldhaploid
Genome composition3 908 902 bp · 42,0% GCMediterraneibacter gnavus
Signal transduction countsGenes 99 · HK 47 · RR 51CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key