1 Response_reg#1
6-115 aa · 110 aa · 47.4% of protein
Raw token
Response_reg:6:1.13e-35:115:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DW270_RS09955
Response regulator OmpR family
Mediterraneibacter gnavus · GCF_003471005
ClassRRTypeOmpRLength232 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003471005#DW270_RS09955Stable P2CS identifier used across views.
GenomeGCF_003471005Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length232 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage186 / 232 aa (80.2%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa232 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
153-228 aa · 76 aa · 32.8% of protein
Raw token
Trans_reg_C:153:2.56e-30:228:77:77- Raw architecture: Response_reg:6:1.13e-35:115:111:111#Trans_reg_C:153:2.56e-30:228:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003471005::NZ_QRIA01000011.1::G00007
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span91322-94175Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDW270_09960RefSeq proteinWP_004843941.1
Context group ID
GCF_003471005::NZ_QRIA01000011.1::G00007Context members
DW270_RS09950DW270_RS09955
Partner locus tags
DW270_RS09950DW270_RS09955
Partner old locus tags
DW270_09955DW270_09960
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_004843941.1Primary protein accession used for annex mappings.
UniProt accessionA7B5U9Primary UniProt accession resolved in the annex database.
UniProt IDA7B5U9_MEDG7Display identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDW270_RS09955Primary locus identifier stored in the genes table.
Old locus tagDW270_09960Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QRIA01000011.1Sequence record reported by the local genomic context database.
Genomic interval93 477-94 175 nt699 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span91 322-94 175 ntGCF_003471005::NZ_QRIA01000011.1::G00007
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003471005::NZ_QRIA01000011.1::G00007Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QRIA01000011.1All displayed genes belong to this local TCS context.
Neighborhood span91 322-94 175 nt2 854 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
91 322 nt94 175 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DW270_RS09950GCF_003471005#DW270_RS09950
HKClassic
91 322-93 505 nt · Reverse (-)
DW270_RS09955GCF_003471005#DW270_RS09955
RROmpRCurrent focus
93 477-94 175 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_964242535#ACESTQ_RS10050Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1119261
Simplified PFAM architecture for RROC_1119261
PFAM domain coverage: 186 / 233 aa (79.8%)
1 aa233 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[6-115] | Trans_reg_C[153-228]
- Domain count: 2
- Matched identifier: RROC_1119261
- Positioned domains: Response_reg 6-115 ; Trans_reg_C 153-228
Cluster members and taxonomy
Representative gene: GCF_964242535#ACESTQ_RS10050
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 33 038 · GCF_003471005
AssemblyASM347100v1 · Scaffoldhaploid
Genome composition3 413 278 bp · 42,5% GCMediterraneibacter gnavus
Signal transduction countsGenes 91 · HK 44 · RR 46CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key