1 HAMP#1
301-373 aa · 73 aa · 12.2% of protein
Raw token
HAMP:301:0.000000018:373:73:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DW270_RS08440
Histidine kinase, Classic
Mediterraneibacter gnavus · GCF_003471005
ClassHKTypeClassicLength600 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003471005#DW270_RS08440Stable P2CS identifier used across views.
GenomeGCF_003471005Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
HAMPHis_kinaseHATPase_c
Protein length600 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage237 / 600 aa (39.5%)Merged over positioned domains only.
Domain description1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa600 aa
Domain-by-domain annotation3 items
2 His_kinase#2
384-462 aa · 79 aa · 13.2% of protein
Raw token
His_kinase:384:3.54e-24:462:79:803 HATPase_c#3
479-563 aa · 85 aa · 14.2% of protein
Raw token
HATPase_c:479:0.00000169:563:85:109- Raw architecture: HAMP:301:0.000000018:373:73:69#His_kinase:384:3.54e-24:462:79:80#HATPase_c:479:0.00000169:563:85:109
- Domain description: 1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003471005::NZ_QRIA01000009.1::G00050
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span10477-13033Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDW270_08445RefSeq proteinWP_118262961.1
Context group ID
GCF_003471005::NZ_QRIA01000009.1::G00050Context members
DW270_RS08435DW270_RS08440
Partner locus tags
DW270_RS08435DW270_RS08440
Partner old locus tags
DW270_08440DW270_08445
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_118262961.1Primary protein accession used for annex mappings.
UniProt accessionA0A414SI01Primary UniProt accession resolved in the annex database.
UniProt IDA0A414SI01_MEDGNDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDW270_RS08440Primary locus identifier stored in the genes table.
Old locus tagDW270_08445Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QRIA01000009.1Sequence record reported by the local genomic context database.
Genomic interval11 231-13 033 nt1 803 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span10 477-13 033 ntGCF_003471005::NZ_QRIA01000009.1::G00050
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003471005::NZ_QRIA01000009.1::G00050Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QRIA01000009.1All displayed genes belong to this local TCS context.
Neighborhood span10 477-13 033 nt2 557 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
10 477 nt13 033 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DW270_RS08435GCF_003471005#DW270_RS08435
RRunclassified
10 477-11 229 nt · Reverse (-)
DW270_RS08440GCF_003471005#DW270_RS08440
HKClassicCurrent focus
11 231-13 033 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003471005#DW270_RS08440The current gene is the representative for this cluster.
PFAM architectureHis_kinase + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1053607
Simplified PFAM architecture for HKOC_1053607
PFAM domain coverage: 156 / 600 aa (26.0%)
1 aa600 aa
His_kinaseHATPase_c
- Simplified architecture: His_kinase + HATPase_c
- Raw architecture: His_kinase[391-465] | HATPase_c[484-564]
- Domain count: 2
- Matched identifier: HKOC_1053607
- Positioned domains: His_kinase 391-465 ; HATPase_c 484-564
Cluster members and taxonomy
Representative gene: GCF_003471005#DW270_RS08440
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 33 038 · GCF_003471005
AssemblyASM347100v1 · Scaffoldhaploid
Genome composition3 413 278 bp · 42,5% GCMediterraneibacter gnavus
Signal transduction countsGenes 91 · HK 44 · RR 46CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key