1 HisKA#1
42-97 aa · 56 aa · 21.0% of protein
Raw token
HisKA:42:0.00000000000000312:97:56:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DW270_RS01165
Histidine kinase, Classic
Mediterraneibacter gnavus · GCF_003471005
ClassHKTypeClassicLength267 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_003471005#DW270_RS01165Stable P2CS identifier used across views.
GenomeGCF_003471005Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length267 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage171 / 267 aa (64.0%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa267 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
144-258 aa · 115 aa · 43.1% of protein
Raw token
HATPase_c:144:1.8e-19:258:116:109- Raw architecture: HisKA:42:0.00000000000000312:97:56:64#HATPase_c:144:1.8e-19:258:116:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_003471005::NZ_QRIA01000001.1::G00003
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span216063-216866Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDW270_01165RefSeq proteinWP_243036054.1
Context group ID
GCF_003471005::NZ_QRIA01000001.1::G00003Context members
DW270_RS01165
Partner locus tags
DW270_RS01165
Partner old locus tags
DW270_01165
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_243036054.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDW270_RS01165Primary locus identifier stored in the genes table.
Old locus tagDW270_01165Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QRIA01000001.1Sequence record reported by the local genomic context database.
Genomic interval216 063-216 866 nt804 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span216 063-216 866 ntGCF_003471005::NZ_QRIA01000001.1::G00003
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003471005::NZ_QRIA01000001.1::G00003Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QRIA01000001.1All displayed genes belong to this local TCS context.
Neighborhood span216 063-216 866 nt804 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
216 063 nt216 866 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
DW270_RS01165GCF_003471005#DW270_RS01165
HKClassicCurrent focus
216 063-216 866 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_028327405#PNX04_RS06935Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2856123
Simplified PFAM architecture for HKOC_2856123
PFAM domain coverage: 159 / 331 aa (48.0%)
1 aa331 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[104-161] | HATPase_c[208-308]
- Domain count: 2
- Matched identifier: HKOC_2856123
- Positioned domains: HisKA 104-161 ; HATPase_c 208-308
Cluster members and taxonomy
Representative gene: GCF_028327405#PNX04_RS06935
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 33 038 · GCF_003471005
AssemblyASM347100v1 · Scaffoldhaploid
Genome composition3 413 278 bp · 42,5% GCMediterraneibacter gnavus
Signal transduction countsGenes 91 · HK 44 · RR 46CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key